View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_31 (Length: 406)
Name: NF3069_high_31
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 25378052 - 25377736
Alignment:
| Q |
1 |
aaaaccaggacagagaagcggtgaaaaatcacatagaagagatagccggagtggttgaatttaaaacagagagatagagaggtggtttatttaaggtcgg |
100 |
Q |
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| T |
25378052 |
aaaaccaggacagagaagcggtgaaaaatcacatagaagagatagccggagtggttgaatttaaaacagagagatagagaggtggtttatttaaggtcgg |
25377953 |
T |
|
| Q |
101 |
tttttggtaattaaagcagaaaggagaagaccgactaggccctaacttcattcaatcttcaagtaatagaagaattactcgcttgtgacttaaggcggaa |
200 |
Q |
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| T |
25377952 |
tttt-ggtaattaaagcagaaaggagaagaccgactaggccctaacttcattcaatcttcaagtaatagaagaattactcgcttgtgacttaaggcggaa |
25377854 |
T |
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| Q |
201 |
caatgaagcttataactattgtagaccaaacatgagtaatcattatactactctaaacagcatggattaatttgatcaccacttcaatttcttcaaacaa |
300 |
Q |
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| T |
25377853 |
caatgaagcttataactattgtagaccaaacatgagtaatcattatactactctaaacagcatggattaatttgatcaccacttcaatttcttcaaacaa |
25377754 |
T |
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| Q |
301 |
ctatgccaagaagtgtta |
318 |
Q |
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| T |
25377753 |
ctatgccaagaagtgtta |
25377736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 25377705 - 25377637
Alignment:
| Q |
322 |
gacaaaaacaaagcatgtaaatgagaatgatggatttaatgcagactatacattggtaaaatgttttaa |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377705 |
gacaaaaacaaagcatgtaaatgagaatgatggatttaatgcagactatacattggtaaaatgttttaa |
25377637 |
T |
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