View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_high_36 (Length: 385)
Name: NF3069_high_36
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 37776712 - 37776358
Alignment:
| Q |
14 |
ttgctagcattactctctttaagtaatgcaaagttcatggcttctatatgacttcaaaaacagtttagaagtcatgctaataacatcatatttataggat |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37776712 |
ttgctagcattactctctt-aagtaatgcaaagttcatggcttctatatgacttcaaaaacagtttagaagtcacgctaataacatcatatttataggat |
37776614 |
T |
|
| Q |
114 |
gaaaaacaatagttttctacatgtctcacgcaagaaaatggacaaacatattgtttctgattttccaaagaaaacatgaactgagattacaaaaatatac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37776613 |
gaaaaacaatagttttctacatgtctcacgcaagaaaatggacaaacataatgtttctgattttccaaagaaaacatgaactgagattaaaaaaatatac |
37776514 |
T |
|
| Q |
214 |
tgctaaaaagtaaatgtaacaaaccttacatcttgtaacataagcatgtgcaacatctgcactatagttgagagtgaaaatgaatggctccattttattg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37776513 |
tgctaaaaagtaaatgtaacaaaccttacatcttgtaacataagcatgtgcaacatctgcaatatacttgagagtgaaaatgaatggctccattttattg |
37776414 |
T |
|
| Q |
314 |
tcaataaaaaattaacagcatccaaacaagacgaaaaacataattttcctacatgt |
369 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37776413 |
tcaataaaaaattaacagcatccgaacaagacgaaaaacataattttcctacatgt |
37776358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University