View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_high_4 (Length: 679)

Name: NF3069_high_4
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_high_4
NF3069_high_4
[»] chr1 (1 HSPs)
chr1 (6-664)||(37054968-37055627)


Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 6 - 664
Target Start/End: Complemental strand, 37055627 - 37054968
Alignment:
Q  6 aggagcagagaagtaaagaaggcctggtacaactacaactgccaaaggttcaggggttccctgctttgcttggagtagcattaaagacagtactgtttca 105  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055627 aggaacagggaagtaaagaaggcctggtacaactacaactgccaaaggttcaggggttccctgctttgcttggagtagcattaaagacagtactgtttca 37055528  T
Q  106 gatcttattttcattcaccagcactaaccaaatgaaaaaatattcannnnnnng-atgnnnnnnnnnnnnnggaaacaagcttttataagaggaaagctg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||             |||||||||||||||||||||||||||||    
T  37055527 gatcttattttcattcaccagcactaaccaaatgaaaaaatattcatttttttttatgaaaaaaacaaaaaggaaacaagcttttataagaggaaagctg 37055428  T
Q  205 cattaacttttagttggaagaaagaaaaagaaaatgagttgtggttctgagcttcttaccatgatcttcatcatcattatcacactcttggttcctttat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055427 cattaacttttagttggaagaaagaaaaagaaaatgagttgtggttctgagcttcttaccatgatcttcatcatcattatcacactcttggttcctttat 37055328  T
Q  305 catcatcacaaaggactcacattttgagtgttggtgctttaatcaatgcagctggaagcttccatgttcatactttacaagataactattacatgaaaga 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055327 catcatcacaaaggactcacattttgagtgttggtgctttaatcaatgcagctggaagcttccatgttcatactttacaagataactattacatgaaaga 37055228  T
Q  405 acaagaaaatgaaaagaagcaggttcagaaaatctcaggtttagatgagaatgaagagaaacaaggttttatagttgaaaagtttagatctttacttggt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055227 acaagaaaatgaaaagaagcaggttcagaaaatctcaggtttagatgagaatgaagagaaacaaggttttatagttgaaaagtttagatctttacttggt 37055128  T
Q  505 ttaaagagtttccacaaaagggtaccttctaaatccaatggtgattctgattctgattctgatcagtttctcacaccatcaccttctccatcacaaaaca 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055127 ttaaagagtttccacaaaagggtaccttctaaatccaatggtgattctgattctgattctgatcagtttctcacaccatcaccttctccatcacaaaaca 37055028  T
Q  605 ttgaagctgaagttgaagctccagctccagctccaacaccttctcaagtaatgcactttc 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055027 ttgaagctgaagttgaagctccagctccagctccaacaccttctcaagtaatgcactttc 37054968  T

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