View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_45 (Length: 347)
Name: NF3069_high_45
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 41658204 - 41658521
Alignment:
| Q |
13 |
aatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41658204 |
aatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggtgcaggacaagctgggtagtaaacaaag |
41658303 |
T |
|
| Q |
113 |
cctaatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41658304 |
cctaatgacatcgtatccattaaggcgtgttctctttctctgcctaactccttcacattcaatttcttaagaagcacttttagcaattttctaataaaag |
41658403 |
T |
|
| Q |
213 |
cttcagcatatttcatatattctagtgcttgatccctgcaaaaatgatagtcaatgaagactgatatcaatatttgttgaatttacaacttaaatagtta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658404 |
cttcagcatatttcatatattctagtgcttgatccctgcaaaaatgatagtcaatcaagactgatatcaatatttgttgaatttacaacttaaatagtta |
41658503 |
T |
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| Q |
313 |
aatttcatgatatacaca |
330 |
Q |
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|||||||||||||||||| |
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| T |
41658504 |
aatttcatgatatacaca |
41658521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 14628507 - 14628782
Alignment:
| Q |
13 |
aatatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||| |
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| T |
14628507 |
aatatcatcttgtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaag |
14628606 |
T |
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| Q |
113 |
cctaatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaag |
212 |
Q |
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|||||| ||| | | ||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14628607 |
cctaatatcattgcacccattaacgcgtattctctttctttgtctaactccttcacattcagtttcttaagaagcacttttagcaactttctaataaaag |
14628706 |
T |
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| Q |
213 |
cttcagcatatttcatatattctagtgcttgatccctgc-aaaaatgatagtcaatgaagactgatatcaatattt |
287 |
Q |
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| T |
14628707 |
cgtcagcatatttcatatattctagtgcttgattcctgcaaaaaaagatagtcaatcaagactgatatcaatattt |
14628782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 14644314 - 14644587
Alignment:
| Q |
15 |
tatcatcttgtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaagcc |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
14644314 |
tatcatcttgtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaagcc |
14644413 |
T |
|
| Q |
115 |
taatgacatcgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaagct |
214 |
Q |
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|||| ||| | | ||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14644414 |
taatatcattgcacccattaaagcgtgttctctttctttgtctaactcgttcacattcagtttcttaagaagcacttgtagcaattttctaataaaagcg |
14644513 |
T |
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| Q |
215 |
tcagcatatttcatatattctagtgcttgatccctgc-aaaaatgatagtcaatgaagactgatatcaatattt |
287 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||| |
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| T |
14644514 |
tcagcatatttcatatattctagtgcttgattcctgcaaaaaaagatagtcaatcaagactgatatcaatattt |
14644587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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