View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_48 (Length: 345)
Name: NF3069_high_48
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_48 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 41949671 - 41950006
Alignment:
| Q |
10 |
caatgagctaaggcgacatattgttctattaaattctctacggttccaccactccactcctttgatagttatgaaatgatccacnnnnnnnactttgtcc |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41949671 |
caatgagctaaggcgatgtattgttctattaaattctctatggttccaccactccactcctttgatagttatgaaatgatccactttttttactttgtcc |
41949770 |
T |
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| Q |
110 |
cattttattctctttataaaatattaaccatatggattcttacatccaccattatttctagtagatagaatataacctattatatagaaatcaggacgct |
209 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41949771 |
cattttattctcttaataaaatattaaccatatggattcttacatgcaccattatttctagtagatagaatataacctattatatagaaatcaggacgct |
41949870 |
T |
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| Q |
210 |
cttgggaacacaacagtagaactcattatttaggaacagtagattgattgattatgtaaatagtatatgaggctctatttagataagcagcttagttaag |
309 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41949871 |
ctagggaacacaacagtagaactcattatttaggaacagtagatggattgattatgtaaatagtatatgaggctctatttagataagcagcttagttaag |
41949970 |
T |
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| Q |
310 |
tgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41949971 |
tgcttataggataaatgtttatcatataagtgctta |
41950006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3101235 - 3101191
Alignment:
| Q |
291 |
gataagcagcttagttaagtgcttataggataaatgtttatcata |
335 |
Q |
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||||||||||||| |||||| ||||||| ||||||| |||||||| |
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| T |
3101235 |
gataagcagcttaattaagtccttatagcataaatgcttatcata |
3101191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 29699133 - 29699195
Alignment:
| Q |
283 |
tctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
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||||||| ||||| | ||||||||||||||||||| |||||| |||||||||||| |||||| |
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| T |
29699133 |
tctatttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgctta |
29699195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 6918918 - 6918972
Alignment:
| Q |
291 |
gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
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||||| ||||||| ||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
6918918 |
gataaacagcttacttaagtgtctatagcataagtgtttatcatataagtgctta |
6918972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 6950219 - 6950271
Alignment:
| Q |
287 |
tttagataagcagcttagttaagtgcttataggataaatgtttatcatataag |
339 |
Q |
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||||||||| || |||| |||||||||||||| ||||| | |||||||||||| |
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| T |
6950219 |
tttagataaacaacttaattaagtgcttatagcataaacgcttatcatataag |
6950271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 49365983 - 49365917
Alignment:
| Q |
279 |
aggctctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
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||||||| ||| ||||| || |||||||||| |||||||| ||||| |||||| ||||||||||||| |
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| T |
49365983 |
aggctctgtttggataaacaacttagttaagcgcttatagcataaacgtttataatataagtgctta |
49365917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 24263328 - 24263272
Alignment:
| Q |
285 |
tatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtg |
341 |
Q |
| |
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||||| ||||| ||| ||| |||||||||||||| ||||| ||||| |||||||||| |
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| T |
24263328 |
tatttggataaacagtttaattaagtgcttatagcataaacgtttagcatataagtg |
24263272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 5630110 - 5630044
Alignment:
| Q |
279 |
aggctctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
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||||||| ||| ||||| || |||| |||||| ||||||| |||| |||||||||||||||| |||| |
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| T |
5630110 |
aggctctgtttggataaacaacttaattaagtccttatagaataagtgtttatcatataagtactta |
5630044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 47003983 - 47004024
Alignment:
| Q |
300 |
cttagttaagtgcttataggataaatgtttatcatataagtg |
341 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||| |
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| T |
47003983 |
cttaattaagtgcttatagcaaaaatgtttatcatataagtg |
47004024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 18512602 - 18512548
Alignment:
| Q |
291 |
gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
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|||||||| |||| |||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
18512602 |
gataagcaacttaattaagtgcttatagcataaacatttatcatataagagctta |
18512548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 33640995 - 33641048
Alignment:
| Q |
291 |
gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctt |
344 |
Q |
| |
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||||| ||||||| |||||||||||||| |||| | ||||||||||||||||| |
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| T |
33640995 |
gataaacagcttaattaagtgcttatagaataatcgcttatcatataagtgctt |
33641048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 7342091 - 7342131
Alignment:
| Q |
305 |
ttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
7342091 |
ttaagtgcttatagtataaatgcttatcagataagtgctta |
7342131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 23785149 - 23785187
Alignment:
| Q |
300 |
cttagttaagtgcttataggataaatgtttatcatataa |
338 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| |
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| T |
23785149 |
cttaattaagtgcttatagcataaatgtttatcatataa |
23785187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 32386725 - 32386692
Alignment:
| Q |
312 |
cttataggataaatgtttatcatataagtgctta |
345 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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| T |
32386725 |
cttatagtataaatgtttatcatataagtgctta |
32386692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 18264232 - 18264272
Alignment:
| Q |
305 |
ttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||| |
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|
| T |
18264232 |
ttaagtgcgtatagtataaacgtttatcatataagtgctta |
18264272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 20982304 - 20982264
Alignment:
| Q |
305 |
ttaagtgcttataggataaatgtttatcatataagtgctta |
345 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||||||||| |
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|
| T |
20982304 |
ttaagtgcttatagcataagtgcttatcatataagtgctta |
20982264 |
T |
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