View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_high_49 (Length: 332)

Name: NF3069_high_49
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_high_49
NF3069_high_49
[»] chr2 (4 HSPs)
chr2 (19-322)||(9946684-9946983)
chr2 (282-316)||(8192350-8192384)
chr2 (282-316)||(14486990-14487024)
chr2 (282-316)||(28194136-28194170)
[»] chr4 (3 HSPs)
chr4 (285-322)||(24273381-24273418)
chr4 (282-320)||(22488026-22488064)
chr4 (284-316)||(31140102-31140134)
[»] chr7 (4 HSPs)
chr7 (282-316)||(2344468-2344502)
chr7 (282-320)||(17279696-17279734)
chr7 (282-316)||(21574100-21574134)
chr7 (284-316)||(22696490-22696522)
[»] chr5 (2 HSPs)
chr5 (282-316)||(4603942-4603976)
chr5 (282-316)||(32059438-32059472)
[»] chr3 (3 HSPs)
chr3 (282-316)||(48977553-48977587)
chr3 (284-316)||(6041670-6041702)
chr3 (286-318)||(16140435-16140467)
[»] scaffold0049 (1 HSPs)
scaffold0049 (284-316)||(66919-66951)
[»] chr1 (2 HSPs)
chr1 (284-316)||(1486585-1486617)
chr1 (284-316)||(35138153-35138185)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 9946983 - 9946684
Alignment:
Q  19 tcgagaccaagagacaatcctctcaagaggctacatacgctcaattctatttgaatcaaaagccatatacacatggtcatggagagaaaggatttgcgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9946983 tcgagaccaagagacaatcctctcaagaggctacatacgctcaattctatttgaatcaaaagccatatacacatggtcatggagagaaaggatttgcgca 9946884  T
Q  119 caagtcagatctacactctagaagaatccaaccaacattcttaatgaaatctttaagccaaaaagaaaatgagctagcaaacacttacactagacctgaa 218  Q
    ||||| |||||||||  |||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9946883 caagtgagatctacatactaggagaatccaaccaacattcttaataaaatccttaagccaaaaagaaaacgagctagcaaacacttacactagacctgaa 9946784  T
Q  219 caacacgcatacaagaagaagnnnnnnnccatgcgtctaatcttcatcttttgaccatgtgtatgaaaactcggtatctgatccaaggaccgactaattt 318  Q
    ||||||||||||||||| ||         |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9946783 caacacgcatacaagaaaaa----aaaatcatgcgtccaatcttcgtcttttgaccatgtgtatgaaaactcggtatctgatctaaggaccgactaattt 9946688  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 8192350 - 8192384
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  8192350 tgaaaactcggtatccgatccaaggaccgactaat 8192384  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 14487024 - 14486990
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  14487024 tgaaaactcggtatccgatccaaggaccgactaat 14486990  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 28194136 - 28194170
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  28194136 tgaaaactcggtatccgatccaaggaccgactaat 28194170  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 24273418 - 24273381
Alignment:
Q  285 aaactcggtatctgatccaaggaccgactaatttgatg 322  Q
    |||||||||||||||||||||||||||||||| |||||    
T  24273418 aaactcggtatctgatccaaggaccgactaatctgatg 24273381  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 22488026 - 22488064
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaatttga 320  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  22488026 tgaaaacttggtatccgatccaaggaccgactaatttga 22488064  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 31140102 - 31140134
Alignment:
Q  284 aaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||    
T  31140102 aaaactcggtatctggtccaaggaccgactaat 31140134  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 2344502 - 2344468
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  2344502 tgaaaactcggtatccgatccaaggaccgactaat 2344468  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 17279734 - 17279696
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaatttga 320  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  17279734 tgaaaactcggtatccgatccaaagaccgactaatttga 17279696  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 21574100 - 21574134
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  21574100 tgaaaactcggtatccgatccaaggaccgactaat 21574134  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 22696522 - 22696490
Alignment:
Q  284 aaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||| |||||||||||||||||||    
T  22696522 aaaactcggtatccgatccaaggaccgactaat 22696490  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 4603976 - 4603942
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  4603976 tgaaaactcggtatccgatccaaggaccgactaat 4603942  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 32059438 - 32059472
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  32059438 tgaaaactcggtatccgatccaaggaccgactaat 32059472  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 48977587 - 48977553
Alignment:
Q  282 tgaaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||||| |||||||||||||||||||    
T  48977587 tgaaaactcggtatccgatccaaggaccgactaat 48977553  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 6041670 - 6041702
Alignment:
Q  284 aaaactcggtatctgatccaaggaccgactaat 316  Q
    |||||||||||||||||||||| ||||||||||    
T  6041670 aaaactcggtatctgatccaagaaccgactaat 6041702  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 16140467 - 16140435
Alignment:
Q  286 aactcggtatctgatccaaggaccgactaattt 318  Q
    ||||||||||||||| |||||||||||||||||    
T  16140467 aactcggtatctgattcaaggaccgactaattt 16140435  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 66951 - 66919
Alignment:
Q  284 aaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||| |||||||||||||||||||    
T  66951 aaaactcggtatccgatccaaggaccgactaat 66919  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 1486617 - 1486585
Alignment:
Q  284 aaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||| |||||||||||||||||||    
T  1486617 aaaactcggtatccgatccaaggaccgactaat 1486585  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 35138185 - 35138153
Alignment:
Q  284 aaaactcggtatctgatccaaggaccgactaat 316  Q
    ||||||||||||| |||||||||||||||||||    
T  35138185 aaaactcggtatccgatccaaggaccgactaat 35138153  T

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