View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_high_51 (Length: 310)

Name: NF3069_high_51
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_high_51
NF3069_high_51
[»] chr7 (2 HSPs)
chr7 (1-295)||(1345070-1345364)
chr7 (26-294)||(1716506-1716771)
[»] chr1 (3 HSPs)
chr1 (227-296)||(7155015-7155084)
chr1 (1-104)||(24272709-24272813)
chr1 (231-292)||(24272876-24272936)
[»] chr6 (3 HSPs)
chr6 (231-294)||(16909974-16910037)
chr6 (240-292)||(11681333-11681384)
chr6 (227-294)||(14721901-14721968)
[»] chr4 (4 HSPs)
chr4 (227-293)||(53469524-53469590)
chr4 (1-104)||(13816904-13817009)
chr4 (258-296)||(32015370-32015408)
chr4 (1-104)||(32015124-32015229)
[»] chr5 (1 HSPs)
chr5 (244-294)||(26896759-26896809)
[»] chr2 (3 HSPs)
chr2 (1-104)||(10128462-10128567)
chr2 (227-282)||(37965168-37965223)
chr2 (1-48)||(15140729-15140777)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1345070 - 1345364
Alignment:
Q  1 gaaatatgtcttgaattagtgttagaaaaagtctcacatcaaagaataagaagaaatatgtaagacttgatcatataaataaggatcttgtgtattagta 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1345070 gaaatatgtcttgaattagtgttagaaaaagtctcacatcgaagaataagaagaaatatgtaagacttgatcatataaataaagatcttgtgtgttagta 1345169  T
Q  101 tttcaccaatagttaatagtgagcgagttttgctattgctggtattacttctactattcagtatctattatcattgattatagtgtaannnnnnncaatg 200  Q
    |||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||| | | ||||| |||||||||||||       |||||    
T  1345170 tttcaccaatagttaatagttaacgagtcttgctattgctgatattacttctactattcagtatatgtaatcatcgattatagtgtaatttttttcaatg 1345269  T
Q  201 actctgcctgtagattagtaaaaacgttgttggatacttcgttaaatcttgtgtcgttttttattctatcttttactattattatcattattctt 295  Q
    ||||||| ||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1345270 actctgcatgtagattagtaagaatgttgttggatactacgttcaatcttgtgtcgttttttattctatcttttactattattatcattattctt 1345364  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 26 - 294
Target Start/End: Complemental strand, 1716771 - 1716506
Alignment:
Q  26 aaaaagtctcacatcaaagaataagaagaaatatgtaa-gacttgatcatataaataaggatcttgtgtattagtatttcaccaatagttaatagtgagc 124  Q
    ||||| ||||||||| ||||||| ||| |||||||||| ||||||| ||||||||||| | |||||||| ||| ||||||    ||    |||||| ||     
T  1716771 aaaaattctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatc---aatagttagt 1716675  T
Q  125 gagttttgctattgctggtattacttctactattcagtatctattatcattgattatagtgtaannnnnnncaatgactctgcctgtagattagtaaaaa 224  Q
    |||||||  ||| ||||||||||| ||||||||||||||| ||| || || |||||||||| ||       |||| ||||| || | | |||||| || |    
T  1716674 gagtttttttatagctggtattacctctactattcagtatatatgataatcgattatagtggaattcttttcaataactctacccgaaaattagtcaaca 1716575  T
Q  225 cgttgttggatacttcgttaaatcttgtgtcgttttttattctatcttttactattattatcattattct 294  Q
    | |||||||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||| ||||||||||    
T  1716574 cattgttggatactacgttaaatcttatgtcattttt-attctgtcttttactattattgtcattattct 1716506  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 7155084 - 7155015
Alignment:
Q  227 ttgttggatacttcgttaaatcttgtgtcgttttttattctatcttttactattattatcattattcttg 296  Q
    |||||||||||   |||||||||  |||||||||||||| ||||||||||||||||| ||||||||||||    
T  7155084 ttgttggataccatgttaaatctcttgtcgttttttattgtatcttttactattattgtcattattcttg 7155015  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24272709 - 24272813
Alignment:
Q  1 gaaatatgtcttgaattagtgttagaaaaagtctcacatcaaagaataagaagaaatatg-taagacttgatcatataaataaggatcttgtgtattagt 99  Q
    ||||||||||||||||||||||| |||||| |||||||||  ||| || |||||||||||  |||||||||  ||||| |||| |  ||||||| |||||    
T  24272709 gaaatatgtcttgaattagtgttggaaaaaatctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagt 24272808  T
Q  100 atttc 104  Q
    |||||    
T  24272809 atttc 24272813  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 24272876 - 24272936
Alignment:
Q  231 tggatacttcgttaaatcttgtgtcgttttttattctatcttttactattattatcattatt 292  Q
    |||||||  ||| ||||||||||||||||||  |||| ||||||||||||||| ||||||||    
T  24272876 tggataccacgtcaaatcttgtgtcgtttttc-ttctgtcttttactattattgtcattatt 24272936  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 16910037 - 16909974
Alignment:
Q  231 tggatacttcgttaaatcttgtgtcgttttttattctatcttttactattattatcattattct 294  Q
    |||||||  |||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  16910037 tggataccacgttaaatcttgtgtcgtttttcattatgtcttttactattattgtcattattct 16909974  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 11681384 - 11681333
Alignment:
Q  240 cgttaaatcttgtgtcgttttttattctatcttttactattattatcattatt 292  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  11681384 cgttaaatcttgtgtcgtttttcatt-tgtcttttactattattatcattatt 11681333  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 14721901 - 14721968
Alignment:
Q  227 ttgttggatacttcgttaaatcttgtgtcgttttttattctatcttttac--tattattatcattattct 294  Q
    |||||||||||  |||||||||||||||||||||| |||| |||||||||  ||||||| ||||||||||    
T  14721901 ttgttggatac--cgttaaatcttgtgtcgtttttcattcaatcttttactatattattgtcattattct 14721968  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 53469590 - 53469524
Alignment:
Q  227 ttgttggatacttcgttaaatcttgtgtcgttttttattctatcttttactattattatcattattc 293  Q
    |||||||||||  |||||||| ||||||||||||| ||||| |||||||| |||||| |||||||||    
T  53469590 ttgttggataccacgttaaattttgtgtcgtttttcattctgtcttttaccattattgtcattattc 53469524  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13816904 - 13817009
Alignment:
Q  1 gaaatatgtcttgaattagtgttag-aaaaagtctcacatcaaagaataagaagaaatatg-taagacttgatcatataaataaggatcttgtgtattag 98  Q
    ||||||||  |||||||| |||| | ||||||||||||||| ||||||| |||||||||||  |||||||| |||||||||||| || ||| ||| |||     
T  13816904 gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttat 13817003  T
Q  99 tatttc 104  Q
    ||||||    
T  13817004 tatttc 13817009  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 32015370 - 32015408
Alignment:
Q  258 tttttattctatcttttactattattatcattattcttg 296  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  32015370 tttttattctgtcttttactattattatcattaatcttg 32015408  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32015124 - 32015229
Alignment:
Q  1 gaaatatgtcttgaattagtgtt-agaaaaagtctcacatcaaagaataagaagaaatatg-taagacttgatcatataaataaggatcttgtgtattag 98  Q
    |||||||||||||||||||||||   |||||||||||||| ||| |||| ||||| |||||  ||||||||   | |||||||| | | |||||| ||||    
T  32015124 gaaatatgtcttgaattagtgttgtaaaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttag 32015223  T
Q  99 tatttc 104  Q
    ||||||    
T  32015224 tatttc 32015229  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 26896759 - 26896809
Alignment:
Q  244 aaatcttgtgtcgttttttattctatcttttactattattatcattattct 294  Q
    |||| ||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  26896759 aaattttgtgtcgttttttattatatcttttattattattgtcattattct 26896809  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10128462 - 10128567
Alignment:
Q  1 gaaatatgtcttgaattagtgttagaaaaagtctc-acatcaaagaataagaagaaatatgtaa-gacttgatcatataaataaggatcttgtgtattag 98  Q
    |||||||||| |||||||||||| ||||||   || |||||  |||||| ||||||||||| || |||||| ||||||||||||   |||||||| ||||    
T  10128462 gaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttag 10128561  T
Q  99 tatttc 104  Q
    ||||||    
T  10128562 tatttc 10128567  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 37965223 - 37965168
Alignment:
Q  227 ttgttggatacttcgttaaatcttgtgtcgttttttattctatcttttactattat 282  Q
    |||||||||||  |||||||||||||||||||||  ||| | ||||||||||||||    
T  37965223 ttgttggataccacgttaaatcttgtgtcgttttccattttgtcttttactattat 37965168  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15140729 - 15140777
Alignment:
Q  1 gaaatatgtcttgaattagtgttagaaaaa-gtctcacatcaaagaata 48  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||| ||||    
T  15140729 gaaatatgtcttgaattagtgttggaaaaatgtcccacatcaaataata 15140777  T

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