View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_high_58 (Length: 296)

Name: NF3069_high_58
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_high_58
NF3069_high_58
[»] chr7 (8 HSPs)
chr7 (165-286)||(11454462-11454583)
chr7 (134-169)||(28000145-28000180)
chr7 (130-164)||(5031922-5031956)
chr7 (130-168)||(38192899-38192937)
chr7 (130-166)||(13592733-13592769)
chr7 (134-166)||(18655374-18655406)
chr7 (134-166)||(31417529-31417561)
chr7 (134-166)||(44412559-44412591)
[»] chr1 (5 HSPs)
chr1 (165-276)||(42378264-42378375)
chr1 (130-168)||(24004081-24004119)
chr1 (134-169)||(26486796-26486831)
chr1 (134-166)||(13295833-13295865)
chr1 (134-166)||(52413119-52413151)
[»] chr2 (10 HSPs)
chr2 (212-286)||(16374653-16374727)
chr2 (130-167)||(23834489-23834526)
chr2 (134-167)||(7327765-7327798)
chr2 (134-167)||(28739405-28739438)
chr2 (134-167)||(32845454-32845487)
chr2 (134-166)||(758772-758804)
chr2 (134-166)||(19686206-19686238)
chr2 (246-286)||(27179969-27180009)
chr2 (246-286)||(27829511-27829551)
chr2 (130-166)||(34181828-34181864)
[»] chr4 (12 HSPs)
chr4 (130-167)||(31857230-31857267)
chr4 (134-169)||(1952730-1952765)
chr4 (130-165)||(34318659-34318694)
chr4 (134-169)||(47858456-47858491)
chr4 (134-169)||(54097095-54097130)
chr4 (134-167)||(35370415-35370448)
chr4 (134-166)||(26144156-26144188)
chr4 (134-166)||(35904614-35904646)
chr4 (134-166)||(36405880-36405912)
chr4 (133-165)||(42861380-42861412)
chr4 (134-166)||(46360920-46360952)
chr4 (137-165)||(52431362-52431390)
[»] chr3 (14 HSPs)
chr3 (130-167)||(25024536-25024573)
chr3 (130-166)||(41301301-41301337)
chr3 (134-166)||(48489005-48489037)
chr3 (195-274)||(8363251-8363330)
chr3 (131-166)||(9559033-9559068)
chr3 (134-169)||(29853402-29853437)
chr3 (134-165)||(30451558-30451589)
chr3 (134-168)||(17261021-17261055)
chr3 (134-172)||(33898299-33898337)
chr3 (133-166)||(16876140-16876173)
chr3 (134-167)||(55090270-55090303)
chr3 (134-166)||(35434099-35434131)
chr3 (130-166)||(44512277-44512313)
chr3 (134-166)||(54012615-54012647)
[»] chr8 (4 HSPs)
chr8 (196-291)||(22472237-22472333)
chr8 (134-168)||(43383017-43383051)
chr8 (134-166)||(21692632-21692664)
chr8 (134-166)||(41708826-41708858)
[»] chr5 (6 HSPs)
chr5 (131-166)||(35936536-35936571)
chr5 (134-167)||(16920683-16920716)
chr5 (130-167)||(27433517-27433554)
chr5 (130-163)||(37631599-37631632)
chr5 (134-166)||(2724482-2724514)
chr5 (133-169)||(12496762-12496798)
[»] chr6 (7 HSPs)
chr6 (134-172)||(10545823-10545861)
chr6 (134-168)||(22362964-22362998)
chr6 (134-167)||(31826212-31826245)
chr6 (134-166)||(7017068-7017100)
chr6 (134-166)||(25562152-25562184)
chr6 (134-166)||(26101666-26101698)
chr6 (134-166)||(33225440-33225472)
[»] scaffold0192 (1 HSPs)
scaffold0192 (134-166)||(14474-14506)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 11454462 - 11454583
Alignment:
Q  165 tttttcttctttggtcttggcttctgatgatcatgtcaacttgaatcgattcatgacttttttattcgtatcatgtctgagtcgaatcacaagttgttga 264  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11454462 tttttcttctttagtcttggcttctgatgatcatgtcaatttgaatcgattcatgacttttttattcgtatcatgtctgagttgaatcacaagttgttga 11454561  T
Q  265 atcgtatcaattttgttctctg 286  Q
    || |||||||||||||| ||||    
T  11454562 attgtatcaattttgttttctg 11454583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 28000145 - 28000180
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttttt 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  28000145 tatattacagggggtaaagcaccattaacccttttt 28000180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 5031956 - 5031922
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccc 164  Q
    |||||||||||||||||||||||||| ||||||||    
T  5031956 gacatatattacagggggtaaagcaccattaaccc 5031922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 38192899 - 38192937
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccctttt 168  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  38192899 gacatatattacagggggtaatgcactattaaccctttt 38192937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 13592769 - 13592733
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccctt 166  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  13592769 gacatatattacagggggtaatgcaccattaaccctt 13592733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 18655406 - 18655374
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  18655406 tatattacagggggtaaagcaccattaaccctt 18655374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 31417529 - 31417561
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  31417529 tatattacagggggtaaagcaccattaaccctt 31417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 44412559 - 44412591
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  44412559 tatattacagggggtaaagcaccattaaccctt 44412591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 276
Target Start/End: Original strand, 42378264 - 42378375
Alignment:
Q  165 tttttcttctttggtcttggcttctgatgatcatgtcaacttgaatcgattcatgacttttttattcgtatcatgtctgagtcgaatcacaagttgttga 264  Q
    |||||||||| ||||| |||||| ||||||||||||||  |||||||||||||||||||||| ||||| |||||  |||| |||||||||||||||||||    
T  42378264 tttttcttctatggtcctggcttatgatgatcatgtcattttgaatcgattcatgactttttgattcgcatcatacctgaatcgaatcacaagttgttga 42378363  T
Q  265 atcgtatcaatt 276  Q
    |||| |||||||    
T  42378364 atcgaatcaatt 42378375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 24004119 - 24004081
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccctttt 168  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  24004119 gacatatattacagggggtaaagcaccattaaccctttt 24004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 26486796 - 26486831
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttttt 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  26486796 tatattacagggggtaaagcaccattaacccttttt 26486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 13295865 - 13295833
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  13295865 tatattacagggggtaaagcaccattaaccctt 13295833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 52413151 - 52413119
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  52413151 tatattacagggggtaaagcaccattaaccctt 52413119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 16374727 - 16374653
Alignment:
Q  212 gattcatgacttttttattcgtatcatgtctgagtcgaatcacaagttgttgaatcgtatcaattttgttctctg 286  Q
    |||||||| ||| || |||| ||||||| |||| |||||||||||||||| |||||||||||| ||| |||||||    
T  16374727 gattcatggcttcttgattcttatcatgcctgaatcgaatcacaagttgtagaatcgtatcaaatttattctctg 16374653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 23834489 - 23834526
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23834489 gacatatattacagggggtaaagcaccattaacccttt 23834526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 7327798 - 7327765
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  7327798 tatattacagggggtaaagcaccattaacccttt 7327765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 28739438 - 28739405
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  28739438 tatattacagggggtaaagcaccattaacccttt 28739405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 32845487 - 32845454
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  32845487 tatattacagggggtaaagcaccattaacccttt 32845454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 758772 - 758804
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  758772 tatattacagggggtaaagcactattaaccctt 758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 19686206 - 19686238
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  19686206 tatattacagggggtaaagcactattaaccctt 19686238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 27179969 - 27180009
Alignment:
Q  246 tcgaatcacaagttgttgaatcgtatcaattttgttctctg 286  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  27179969 tcgaatcacaagttgttgattcgtatcaattgtgttttctg 27180009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 27829511 - 27829551
Alignment:
Q  246 tcgaatcacaagttgttgaatcgtatcaattttgttctctg 286  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  27829511 tcgaatcacaagttgttgattcgtatcaattgtgttttctg 27829551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 34181828 - 34181864
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccctt 166  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  34181828 gacatatattatagggggtaaagcaccattaaccctt 34181864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 31857230 - 31857267
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||||||| |||||||||||    
T  31857230 gacatatattacagggggtaaagcactattaacccttt 31857267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 1952765 - 1952730
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttttt 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  1952765 tatattacagggggtaaagcaccattaacccttttt 1952730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 34318659 - 34318694
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccct 165  Q
    |||||||||||||||||||||||||| |||||||||    
T  34318659 gacatatattacagggggtaaagcaccattaaccct 34318694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 47858456 - 47858491
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttttt 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  47858456 tatattacagggggtaaagcaccattaacccttttt 47858491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 54097130 - 54097095
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttttt 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  54097130 tatattacagggggtaaagcaccattaacccttttt 54097095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 35370415 - 35370448
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  35370415 tatattacagggggtaaagcaccattaacccttt 35370448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 26144188 - 26144156
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  26144188 tatattacagggggtaaagcaccattaaccctt 26144156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 35904646 - 35904614
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  35904646 tatattacagggggtaaagcaccattaaccctt 35904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 36405880 - 36405912
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  36405880 tatattacagggggtaaagcaccattaaccctt 36405912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 42861412 - 42861380
Alignment:
Q  133 atatattacagggggtaaagcacaattaaccct 165  Q
    ||||||||||||||||||||||| |||||||||    
T  42861412 atatattacagggggtaaagcaccattaaccct 42861380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 46360920 - 46360952
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  46360920 tatattacagggggtaaagcaccattaaccctt 46360952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 52431362 - 52431390
Alignment:
Q  137 attacagggggtaaagcacaattaaccct 165  Q
    |||||||||||||||||||||||||||||    
T  52431362 attacagggggtaaagcacaattaaccct 52431390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 25024573 - 25024536
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25024573 gacatatattacagggggtaaagcactattaacccttt 25024536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 41301301 - 41301337
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||||||| ||||||||||    
T  41301301 gacatatattacagggggtaaagcaccattaaccctt 41301337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 48489037 - 48489005
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||||||||||||||    
T  48489037 tatattacagggggtaaagcacaattaaccctt 48489005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 8363251 - 8363330
Alignment:
Q  195 tcatgtcaacttgaatcgattcatgacttttttattcgtatcatgtctgagtcgaatcacaagttgttgaatcgtatcaa 274  Q
    |||||| || |||| ||||||||| |||| || |||||||||||| |||| | || ||||||  ||||||||||||||||    
T  8363251 tcatgtaaatttgattcgattcattacttcttgattcgtatcatgcctgaatagattcacaaaatgttgaatcgtatcaa 8363330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 9559068 - 9559033
Alignment:
Q  131 acatatattacagggggtaaagcacaattaaccctt 166  Q
    ||||||||||||||||||||||||| ||||||||||    
T  9559068 acatatattacagggggtaaagcaccattaaccctt 9559033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 29853437 - 29853402
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttttt 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  29853437 tatattacagggggtaaagcaccattaacccttttt 29853402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 30451558 - 30451589
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccct 165  Q
    ||||||||||||||||||||||||||||||||    
T  30451558 tatattacagggggtaaagcacaattaaccct 30451589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 17261055 - 17261021
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctttt 168  Q
    |||||||||||||||||||||| ||||||||||||    
T  17261055 tatattacagggggtaaagcaccattaaccctttt 17261021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 33898299 - 33898337
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctttttctt 172  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  33898299 tatattacagggggtaaagcaccattaaccctatttctt 33898337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 16876173 - 16876140
Alignment:
Q  133 atatattacagggggtaaagcacaattaaccctt 166  Q
    ||||||||||||||||||||||| ||||||||||    
T  16876173 atatattacagggggtaaagcaccattaaccctt 16876140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 55090270 - 55090303
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  55090270 tatattacagggggtaaagcaccattaacccttt 55090303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 35434099 - 35434131
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  35434099 tatattacagggggtaaagcaccattaaccctt 35434131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 44512313 - 44512277
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaaccctt 166  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  44512313 gacatatattatagggggtaaagcaccattaaccctt 44512277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 54012615 - 54012647
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  54012615 tatattacagggggtaaagcaccattaaccctt 54012647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 22472333 - 22472237
Alignment:
Q  196 catgtcaacttgaatcgattcatgactttttt-attcgtatcatgtctgagtcgaatcacaagttgttgaatcgtatcaattttgttctctgctcct 291  Q
    ||||||||  ||||||| ||||||| | |||| ||||||||||||  ||| ||||||||||| ||||||| |||||||| ||  |||||||| ||||    
T  22472333 catgtcaatatgaatcgtttcatgaatattttgattcgtatcatgcttgaatcgaatcacaatttgttgattcgtatcatttgagttctctggtcct 22472237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 43383017 - 43383051
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctttt 168  Q
    |||||||||||||||||||||| ||||||||||||    
T  43383017 tatattacagggggtaaagcaccattaaccctttt 43383051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 21692632 - 21692664
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  21692632 tatattacagggggtaaagcaccattaaccctt 21692664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 41708858 - 41708826
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  41708858 tatattacagggggtaaagcaccattaaccctt 41708826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 35936571 - 35936536
Alignment:
Q  131 acatatattacagggggtaaagcacaattaaccctt 166  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35936571 acatatattacagggggtaaagcaccattaaccctt 35936536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 16920683 - 16920716
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  16920683 tatattacagggggtaaagcactattaacccttt 16920716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 27433554 - 27433517
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaacccttt 167  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  27433554 gacatatattacaggggataaagcaccattaacccttt 27433517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 37631632 - 37631599
Alignment:
Q  130 gacatatattacagggggtaaagcacaattaacc 163  Q
    |||||||||||||||||||||||||| |||||||    
T  37631632 gacatatattacagggggtaaagcaccattaacc 37631599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 2724514 - 2724482
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  2724514 tatattacagggggtaaagcaccattaaccctt 2724482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 12496762 - 12496798
Alignment:
Q  133 atatattacagggggtaaagcacaattaacccttttt 169  Q
    |||| |||||||||||||||||| |||||||||||||    
T  12496762 atattttacagggggtaaagcaccattaacccttttt 12496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 10545861 - 10545823
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctttttctt 172  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  10545861 tatattacagggggtaaaacactattaaccctttttctt 10545823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 22362964 - 22362998
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctttt 168  Q
    |||||||||||||||||||||| ||||||||||||    
T  22362964 tatattacagggggtaaagcactattaaccctttt 22362998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 31826245 - 31826212
Alignment:
Q  134 tatattacagggggtaaagcacaattaacccttt 167  Q
    |||||||||||||||||||||| |||||||||||    
T  31826245 tatattacagggggtaaagcaccattaacccttt 31826212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 7017100 - 7017068
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  7017100 tatattacagggggtaaagcaccattaaccctt 7017068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 25562184 - 25562152
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  25562184 tatattacagggggtaaagcaccattaaccctt 25562152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 26101698 - 26101666
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  26101698 tatattacagggggtaaagcaccattaaccctt 26101666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 33225472 - 33225440
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  33225472 tatattacagggggtaaagcaccattaaccctt 33225440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 14474 - 14506
Alignment:
Q  134 tatattacagggggtaaagcacaattaaccctt 166  Q
    |||||||||||||||||||||| ||||||||||    
T  14474 tatattacagggggtaaagcaccattaaccctt 14506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University