View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_62 (Length: 290)
Name: NF3069_high_62
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 3857221 - 3856958
Alignment:
| Q |
12 |
atgtgatgtacacatcaaatgatttaaaataatagaaataatctataaatcaagtg---ttataacttgtgcnnnnnnnggtaatttttataaattctat |
108 |
Q |
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| T |
3857221 |
atgtgatgtacacatcaaatgatttaaactaatagaaataatctataaatcaagtgattttataacttgtccaaaaaaagataattttaataaattctat |
3857122 |
T |
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| Q |
109 |
agtttctcatatagtcatatatattttgtcaatatgtatgaagaccatattgactttcatgcatgacaaaattatacaaaaacatgtaaaatatggtaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3857121 |
agtttctcatatagtcatatatattttgtcaatatgtatgaagaccatattgactttcatgcatgacaacattatacaaaaacatgtaaaatatggtaaa |
3857022 |
T |
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| Q |
209 |
acatagttgaaggacgtgattaacnnnnnnnagtatccacaacatataaattgtaccagttttt |
272 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3857021 |
acatagttgaaggacgtgattaactttttttagtatccacaacatataaattgtaccagttttt |
3856958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 3865978 - 3865715
Alignment:
| Q |
12 |
atgtgatgtacacatcaaatgatttaaaataatagaaataatctataaatcaagtg---ttataacttgtgcnnnnnnnggtaatttttataaattctat |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | | ||||||| ||||||||||| |
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| T |
3865978 |
atgtgatgtacacatcaaatgatttaaactaatagaaataatctataaatcaagtgattttataacttgtccaaaaaaagataattttaataaattctat |
3865879 |
T |
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| Q |
109 |
agtttctcatatagtcatatatattttgtcaatatgtatgaagaccatattgactttcatgcatgacaaaattatacaaaaacatgtaaaatatggtaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3865878 |
agtttctcatatagtcatatatattttgtcaatatgtatgaagaccatattgactttcatgcatgacaacattatacaaaaacatgtaaaatatggtaaa |
3865779 |
T |
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| Q |
209 |
acatagttgaaggacgtgattaacnnnnnnnagtatccacaacatataaattgtaccagttttt |
272 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3865778 |
acatagttgaaggacgtgattaactttttttagtatccacaacatataaattgtaccagttttt |
3865715 |
T |
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