View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_high_65 (Length: 281)
Name: NF3069_high_65
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_65 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 43790614 - 43790351
Alignment:
| Q |
18 |
agatagagtgttattagcaagattaataattttcaatgatttaagggaccctatagaggaaggaatgtttccttcaagcatgttgtttgatgctgcaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43790614 |
agatagagtgttattagcaagattaataattttcaatgatttaagggaccctatagaggaaggaatgtttccttcaagcatgttgtttgatgctgcaaaa |
43790515 |
T |
|
| Q |
118 |
ttttgaaggttttcacagccttgtatctcttcaggtatatggccactaaaactattcatttgtaaatcaagtgatgtaagattcttcaatttaccaattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43790514 |
ttttgaaggttttcacagccttgtatctcttcaggtatatggccactaaaactattcatttgtaaatcaagtgatgtaagattcttcaatttaccaattc |
43790415 |
T |
|
| Q |
218 |
caactggtatggttccatttaaatggcagtaacctacacctaacactgtcatctctttcaagtt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43790414 |
caactggtatggttccatttaaatggcagtaacctacacctaacactgtcaactctttcaagtt |
43790351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University