View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_69 (Length: 260)
Name: NF3069_high_69
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_69 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14180184 - 14179935
Alignment:
| Q |
1 |
ctatgaaaacgatttagaatatgaaagttgaagcaaaaggcaatagacatatgaaagtttattt-attttgaataaaacaaaagccacattaatcaaatt |
99 |
Q |
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| T |
14180184 |
ctatgaaaacgatttagaatatgaaagttgaagcaaaaggcaatagacatatgaaagtttattttattttgaataaaacaaaagccacattaatcaaatt |
14180085 |
T |
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| Q |
100 |
tcataaatattgaagatgaaataaactgtaattactataggtacaatagataaattaatttcgactaacctgacggtttcgaacttttgcaagagagatc |
199 |
Q |
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| T |
14180084 |
tcataaatattgaagatgaaataaactgtaattactacaggtacaatagataaattaatttcgactaacctgacggtttcgaacttttgcaagagagatc |
14179985 |
T |
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| Q |
200 |
tctaattcatgttcaattttactcaagtcatcaaactgtaaatccttcat |
249 |
Q |
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| T |
14179984 |
tctaattcatgttcaattttactcaagtcatcaaactgtaaatctttcat |
14179935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 249
Target Start/End: Original strand, 95871 - 96050
Alignment:
| Q |
66 |
ttttgaataaaacaaaagccacattaatcaaatttcataaatattgaagatgaaataaactgtaattactataggtacaatagataaattaatttcgact |
165 |
Q |
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|||||||||||| |||||||| ||| |||||| ||||| ||||||||||| |||||||||| |||||||| | || |||||||||| |||||| |||| |
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| T |
95871 |
ttttgaataaaataaaagccaaattgatcaaagttcatgaatattgaagaagaaataaact--aattactaga--tagaatagataaaataattttgact |
95966 |
T |
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| Q |
166 |
aacctgacggtttcgaacttttgcaagagagatctctaattcatgttcaattttactcaagtcatcaaactgtaaatccttcat |
249 |
Q |
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| T |
95967 |
aacctggcgctttcgaactttagcaagagatatttctaattcatgttcaattttagtcaagtcatcaaaccgtaaagccttcat |
96050 |
T |
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