View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_high_8 (Length: 651)

Name: NF3069_high_8
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_high_8
NF3069_high_8
[»] chr3 (1 HSPs)
chr3 (16-651)||(32555146-32555780)


Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 16 - 651
Target Start/End: Complemental strand, 32555780 - 32555146
Alignment:
Q  16 cagaggataaacatacgttgttgctatggtaccattaacaataccatcgtaagtgcaagaagtcacattgcaaccaccactagtctgttgcacggtaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32555780 cagaggataaacatacgttgttgctatggtaccattaacaataccatcgtaagtgcaagaagtcacattgcaaccaccactagtctgttgcacggtaaca 32555681  T
Q  116 ttaccaagcataagattgctgctcttacattgcatgctcgagcaagaaacagctagtgaagctggcatacagtacaaactgcagagaaagtaagaaaccc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32555680 ttaccaagcataagattgctgctcttacattgcatgctcgagcaagaaacagctagtgaagctggcatacagtacaaactgcagagaaagtaagaaaccc 32555581  T
Q  216 agatacacaagtcagaatattatggtcagtttgacacggtaacaatggagcaaaaattccctggattcgtttggcataaaaaacatttaaccctgaatta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32555580 agatacacaagtcagaatattatggtcagtttgacacggtaacaatggagcaaaaattccctggattcgtttggcataaaaaacatttaaccctgaatta 32555481  T
Q  316 acaccaacattttcaaacgttttccgtaaaacaaaatgaccctacaaaagaatctagatttatgtataaagagagtaaggaatggattgcaaacagataa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32555480 acaccaacattttcaaacgttttccgtaaaacaaaatgaccctacaaaagaatctagatttatgtataaagagagtaaggaatggattgcaaacagataa 32555381  T
Q  416 taaaaagatgcctagtgagtactttaagtttcggggtccacagctacactgcacacagtgtcctgctgtaatagcataacttccattagggacaagcaat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32555380 taaaaagatgcctagtgagtactttaagtttcggggtccacagctacactgcacacagtgtcctgctgtaatagcataacttccattagggacaagcaat 32555281  T
Q  516 ccaaaatcagcagaatctttcggaaactttgatgcacaggctgcaaaatgaagaacaaatgtcagcaattaaagagcatttacattcacagcatagactg 615  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  32555280 ccaaaatcagcagaatctttcggaaactttgatgcacaggctacaaaatgaagaacaaatgttagcaataaaagagca-ttacattcacagcatagactg 32555182  T
Q  616 aataagacactatttggataaacaacttaatcaagc 651  Q
    ||||||||||||||||||||||||||||||||||||    
T  32555181 aataagacactatttggataaacaacttaatcaagc 32555146  T

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