View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_87 (Length: 238)
Name: NF3069_high_87
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 23772013 - 23771782
Alignment:
| Q |
1 |
caagtaaagtgtaatatattatccttgacnnnnnnnnnnngtgcaatattttatctacaatccacctatattttcaattttttagttcaatcatctaagt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23772013 |
caagtaaagtgtaatatattatccttgacaaaaaaaaaaagtgcaatattttatctacaatccacctaaattttcaattttttagttcaatcatctaagt |
23771914 |
T |
|
| Q |
101 |
atttttacccttaacaaattatcattgatacattctagttggctatagtcttcatctatggtggctaaatttaaccacaaccatagtcacacaaactttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23771913 |
atttttacccttaacaaattatcattgatacattctagttggctatattcttcatctatggtggctaaatttaaccacaaccatcgtcacacaaactttt |
23771814 |
T |
|
| Q |
201 |
cttcccctacattaatgcaaacatacaaaaat |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
23771813 |
cttcccctacattaatgcaaacatacaaaaat |
23771782 |
T |
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