View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_high_91 (Length: 233)
Name: NF3069_high_91
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_high_91 |
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Alignment Details
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 53721446 - 53721530
Alignment:
| Q |
10 |
agcataggcagaaagcgacnnnnnnnatctgatttcaccatccatctttttagcaaggaaattctatgaggatcctgattcctgc |
94 |
Q |
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| T |
53721446 |
agcagaggcagaaagcgactttttttatctgatttcaccatccatctttttagcaaggaaattctatgaggatcctgattcctgc |
53721530 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 53721601 - 53721652
Alignment:
| Q |
164 |
gtatgcatacccgtgtctctcagtaatccacaggagtttggcatggcagcta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53721601 |
gtatgcatacccgtgtctctcagtaatccacaggagtttggcatggcagcta |
53721652 |
T |
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