View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_1 (Length: 931)
Name: NF3069_low_1
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Complemental strand, 6189872 - 6189423
Alignment:
| Q |
12 |
cagataaggatgaaaaagcaaatgagtatccgcaggtaaaatgagcgtgcaacccaaaagttaatttgcgatctgaattgtctgattataaatgtgagta |
111 |
Q |
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| T |
6189872 |
cagataaggatgaaaaagcaaatgagtatccgcaggtaaaatgagcgtgcaacccaaaagttaatttgcgatctgaattgtctgattataaatgtgagta |
6189773 |
T |
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| Q |
112 |
agttgaagatgccacttgttcatcatcagactcctattgttctagttattttgttggtagaatcatattgatgcactagcnnnnnnntccattgcacatg |
211 |
Q |
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| T |
6189772 |
agttgaacatgccacttgttcatcatcagactcctattgttctagttattttgttggtagaatcatattgatgcactagcaaaaaaatccattgcacatg |
6189673 |
T |
|
| Q |
212 |
gtaggagtaagcacatagagatgaggattaattacttgatagagcaagtaagcaaataaacgctaagactagagcattgtgaagatcaagtggcagattt |
311 |
Q |
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| T |
6189672 |
gtaggagtaagcacatagagatgaggtgtaattacttgatagagcaagtaagcaaataaacgctaagactagagcattgtgaagatcaagtggcagattt |
6189573 |
T |
|
| Q |
312 |
gttgaccaaaggagttgcaatcgaagtgtttaagaaaccgagatatttttaatgggaatcgaatcattgactaacatgaattaaggtggtatgttgagaa |
411 |
Q |
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| T |
6189572 |
gttgaccaaaggagttgcaatcgaagtgtttaagaaactgagatatttttaatgggaatcgaatcattgactaacatgaattaaggtggtatgttgagaa |
6189473 |
T |
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| Q |
412 |
atgagcaattcaagttagttagagtcgatgacttgacgtgcaagtaacca |
461 |
Q |
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| T |
6189472 |
atgagcaattcaagttagttagagtcgatgacttgacgtgcaagtaacca |
6189423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 764 - 916
Target Start/End: Complemental strand, 6189170 - 6189018
Alignment:
| Q |
764 |
gcattatcttgtaagcattattctgtaacatatgagttaaaccgttggcatctcctacatctaccgtgacaagttagttctataatcaatattacatgta |
863 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6189170 |
gcattatcttgtaagcattattctgtaacatatgagttaaaccgttggcatctcctacatctactgtgacaagttagttctataatcaatattacatgta |
6189071 |
T |
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| Q |
864 |
atctaataaaaaagttgcaaaaagcaggccatttccttaagagccaagataat |
916 |
Q |
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| T |
6189070 |
atctaataaaaaagttgcaaaaagcaggccatttccttaagagccaagataat |
6189018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 504 - 603
Target Start/End: Complemental strand, 6189380 - 6189281
Alignment:
| Q |
504 |
caacccttttggttgagatccaattgtgtgtggatttgtgcaagtgtataaatacctagtgatgatcaataataattatatacctcattcaagtgaaata |
603 |
Q |
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| T |
6189380 |
caacccttttggttgagatccaattgtgtgtggatttgtgcaagtgtataaatacctagtgatgatcaataataattatatacctcattcaagtgaaata |
6189281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 659 - 733
Target Start/End: Complemental strand, 6189225 - 6189151
Alignment:
| Q |
659 |
aacacatcgtgtatgtatgcgcgcaatcaagaattgtgttgttccaacagacacagcattatcttgtaagcatta |
733 |
Q |
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| T |
6189225 |
aacacaccgtgtgtgtatgcgcacaatcaagaattgtgttgttctaacagacacagcattatcttgtaagcatta |
6189151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 15039068 - 15039001
Alignment:
| Q |
200 |
ccattgcacatggtaggagtaagcacatagagatgaggattaattacttgatagagcaagtaagcaaa |
267 |
Q |
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| T |
15039068 |
ccattgcacatgggagaagtaagcacatagaaatgaggtttcattacttgagagagcaagtaagcaaa |
15039001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 293 - 399
Target Start/End: Original strand, 29117119 - 29117224
Alignment:
| Q |
293 |
aagatcaagtggcagatttgttgaccaa-aggagttgcaatcgaagtgtttaagaaaccgagatatttttaatgggaatcgaatcattgactaacatgaa |
391 |
Q |
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|||||||||||||| |||| || ||||| ||||||| ||| ||||||||||||||| || | || ||||||||| | |||||||||||||||||| |
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| T |
29117119 |
aagatcaagtggcaaatttattaaccaataggagttataattgaagtgtttaagaaattgaaaggctt--aatgggaattgtatcattgactaacatgaa |
29117216 |
T |
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| Q |
392 |
ttaaggtg |
399 |
Q |
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|||||||| |
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| T |
29117217 |
ttaaggtg |
29117224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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