View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_10 (Length: 619)
Name: NF3069_low_10
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 38 - 463
Target Start/End: Complemental strand, 27224167 - 27223742
Alignment:
| Q |
38 |
aggtgttgtggacccacaccttctttgtagtagcacattcttctactcattcactttcttgcatactcaagccaagtgataagattagatgtgcttttcc |
137 |
Q |
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| T |
27224167 |
aggtgttgcgggcccacaccttatttgtagtagcacattcttctactcattcactttcttgcatactcaagccaagtgataagattagatgtgcttttcc |
27224068 |
T |
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| Q |
138 |
attcaagagaactttttcttgttctgctcttgtccaggtgtcttctggcttctcaaattgttttccatcctcttaagtaaccattggaacataatcacca |
237 |
Q |
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| T |
27224067 |
attcaagagaactttttcttgttctgctcttttccaggtgtcttctagtttttcaaattgattttcatcctcttaagtaaccattggaacataatcacca |
27223968 |
T |
|
| Q |
238 |
ttagtgactatcctacacatccttgtatcttgagatttgatgtagagttgcacatttcctttataaaagctatagtttaacccattgaagaaatgtggtt |
337 |
Q |
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| T |
27223967 |
ttagttactatcctacacatgcttgtatcttgagatttgatgtagagttgcacatttcctttctaaaagctatattttaacccattgaagaaatgtggtc |
27223868 |
T |
|
| Q |
338 |
ttgattgagaaccttcttatatgtgatgaagtttgctggtgaaattcattgatcatctatttacttctttttgaatctctcctctaacacttgttaggtg |
437 |
Q |
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| T |
27223867 |
ttgattgagaaccttcttatatgtgataaagtttgctggtgaaattctttgatcatctatttacttctttctgaatctttcctctaacacttgttaggtg |
27223768 |
T |
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| Q |
438 |
ctcaaacccttatattataagctctg |
463 |
Q |
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| T |
27223767 |
ctcaaaccctcatagtttaagctctg |
27223742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 27223589 - 27223517
Alignment:
| Q |
534 |
acaagttattatggttcaccttaattagactagtctagtctcataagcagtgagattttccaatatgctacct |
606 |
Q |
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| T |
27223589 |
acaagttattatggttcaccctaactagactagtctagtcccataaacactgggattttccaatatgctacct |
27223517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 66 - 299
Target Start/End: Original strand, 12084711 - 12084947
Alignment:
| Q |
66 |
agtagcacattcttctactcattcactttcttgcatactcaagccaagtgataagatta---gatgtgcttttccattcaagagaactttttcttgttct |
162 |
Q |
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| T |
12084711 |
agtagcacattcttccaatcttttcctttcttgcatgctcaagccaagttataatattattagatgagtttttgcatccaagagaactctttcttatttt |
12084810 |
T |
|
| Q |
163 |
gctcttgtccaggtgtcttctggcttctcaaattgttttccatcctcttaagtaaccattggaacataatcaccattagtgactatcctacacatccttg |
262 |
Q |
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| T |
12084811 |
gtcattgtccatgtgtcttatggtttctcaatttgagtttcatcctcttgagaaatcgtaggaagataatcaccatcaacaactattctccatatccttg |
12084910 |
T |
|
| Q |
263 |
tatcttgagatttgatgtagagttgcacatttccttt |
299 |
Q |
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| T |
12084911 |
tatcttgatatttgatgttgagtttcatatttccttt |
12084947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 25427240 - 25427335
Alignment:
| Q |
253 |
cacatccttgtatcttgagatttgatgtagagttgcacatttcctttataaaagctatagtttaacccattgaagaaatgtggttttgattgagaa |
348 |
Q |
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||||||||| |||||||||||||||||||||| |||| |||||||| ||||| | ||||||| | ||||| ||||||||||| || |||||||| |
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| T |
25427240 |
cacatccttatatcttgagatttgatgtagagatgcatctttcctttccaaaagttgtagtttagcgcattgtagaaatgtggtcttaattgagaa |
25427335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 25427074 - 25427121
Alignment:
| Q |
50 |
cccacaccttctttgtagtagcacattcttctactcattcactttctt |
97 |
Q |
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||||||||||| ||||||||| | ||||||| |||||||||||||||| |
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| T |
25427074 |
cccacaccttcattgtagtagaaaattcttccactcattcactttctt |
25427121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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