View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_100 (Length: 235)

Name: NF3069_low_100
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_100
NF3069_low_100
[»] chr1 (3 HSPs)
chr1 (12-219)||(28341212-28341419)
chr1 (28-87)||(23233999-23234058)
chr1 (28-82)||(41998396-41998450)
[»] chr8 (4 HSPs)
chr8 (19-82)||(13105129-13105193)
chr8 (28-82)||(34873134-34873188)
chr8 (28-82)||(36035147-36035201)
chr8 (32-77)||(26261255-26261300)
[»] chr7 (1 HSPs)
chr7 (26-80)||(25672368-25672422)
[»] chr5 (4 HSPs)
chr5 (35-76)||(19647373-19647414)
chr5 (28-77)||(30208974-30209023)
chr5 (19-82)||(8241088-8241152)
chr5 (34-82)||(36422549-36422597)
[»] chr4 (2 HSPs)
chr4 (28-92)||(42381071-42381135)
chr4 (28-92)||(47929293-47929357)
[»] chr2 (1 HSPs)
chr2 (19-82)||(32854570-32854634)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 28341212 - 28341419
Alignment:
Q  12 ataatactatatgcaaggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagctactatgatgatgtgggaaatagg 111  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341212 ataatactatatgtaaggtcggggttcaaacctcaggtaccccacttctccacatttaaaatgtgtaagctatagctactatgatgatgtgggaaatagg 28341311  T
Q  112 gtgtttaattttaacattgaaacctttcaggatgataaagttagtaatggaaaaattggtatgaaggttattatggttgatgtaaggagaagtttctgct 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341312 gtgtttaattttaacattgaaacctttcaagatgataaagttagtaatggaaaaattggtatgaaggttattatggttgatgtaaggagaagtttctgct 28341411  T
Q  212 atgataag 219  Q
    ||||||||    
T  28341412 atgataag 28341419  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 23233999 - 23234058
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagc 87  Q
    |||||||||||||||| |||  ||||||||||| |||||||| ||||||| |||| ||||    
T  23233999 ggtcggggttcgaaccccagacaccctacttctccacatttataatgtgtgagctctagc 23234058  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 41998396 - 41998450
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    ||||||||||||||||  ||  ||||||||||| |||||||||||||||| ||||    
T  41998396 ggtcggggttcgaaccctagacaccctacttctccacatttaaaatgtgtgagct 41998450  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 13105129 - 13105193
Alignment:
Q  19 tatatgcaaggtc-ggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    ||||||||||| | ||||||||||||||||  |||| |||||| |||||||||||||||| ||||    
T  13105129 tatatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagct 13105193  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 34873134 - 34873188
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    |||||||||||||||||| |  |||| |||||| |||||||||||||||| ||||    
T  34873134 ggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagct 34873188  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 36035201 - 36035147
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    |||||||||||||||||| |  |||| |||||| |||||||||||||||| ||||    
T  36035201 ggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagct 36035147  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 26261300 - 26261255
Alignment:
Q  32 ggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgt 77  Q
    |||||||||||||||| || || |||||||||| ||||||||||||    
T  26261300 ggggttcgaacctcagatatcccacttcttcacgtttaaaatgtgt 26261255  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 25672422 - 25672368
Alignment:
Q  26 aaggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaag 80  Q
    ||||| || |||| ||||||||  |||||||||||||||||||| ||||||||||    
T  25672422 aaggttggagttcaaacctcagacaccctacttcttcacatttataatgtgtaag 25672368  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 19647414 - 19647373
Alignment:
Q  35 gttcgaacctcaggtaccctacttcttcacatttaaaatgtg 76  Q
    ||||||||||| | ||||||||||||||| ||||||||||||    
T  19647414 gttcgaacctcggataccctacttcttcatatttaaaatgtg 19647373  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 30209023 - 30208974
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgt 77  Q
    |||||||||||||||||| || |||| |||||| || |||||||||||||    
T  30209023 ggtcggggttcgaacctcgggcaccccacttctccatatttaaaatgtgt 30208974  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 8241088 - 8241152
Alignment:
Q  19 tatatgcaagg-tcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    ||||||||||| |||||||||||||| | |  |||| |||||| |||||||||||||||| ||||    
T  8241088 tatatgcaagggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagct 8241152  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 36422549 - 36422597
Alignment:
Q  34 ggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    |||||||||||||| ||| ||||||||||||||| || |||||| ||||    
T  36422549 ggttcgaacctcagatacactacttcttcacattaaatatgtgtgagct 36422597  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 42381135 - 42381071
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagctacta 92  Q
    ||||||||||||||||||||  |||| |||||| |||| ||||| ||||| |||| |||| ||||    
T  42381135 ggtcggggttcgaacctcagacaccccacttctccacaattaaattgtgtgagctttagccacta 42381071  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 47929293 - 47929357
Alignment:
Q  28 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagctacta 92  Q
    ||||| |||||||||||| |  |||| |||||| |||||||||||||||| |||| |||| ||||    
T  47929293 ggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagctctagccacta 47929357  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 32854570 - 32854634
Alignment:
Q  19 tatatgcaaggtc-ggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 82  Q
    ||||||||||| | |||||||||||| | |  ||||||||||| |||||||||||||||| ||||    
T  32854570 tatatgcaagggccggggttcgaaccccggacaccctacttctccacatttaaaatgtgtgagct 32854634  T

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