View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_104 (Length: 226)

Name: NF3069_low_104
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_104
NF3069_low_104
[»] chr1 (21 HSPs)
chr1 (63-211)||(45693666-45693815)
chr1 (1-47)||(28998643-28998689)
chr1 (1-47)||(29004359-29004405)
chr1 (1-47)||(31735914-31735960)
chr1 (1-47)||(46432118-46432164)
chr1 (1-46)||(27339526-27339571)
chr1 (1-48)||(2510721-2510768)
chr1 (1-48)||(21948581-21948628)
chr1 (1-47)||(6115479-6115525)
chr1 (1-47)||(9459812-9459858)
chr1 (1-47)||(9463639-9463685)
chr1 (1-47)||(15295238-15295284)
chr1 (1-47)||(24325502-24325548)
chr1 (1-47)||(47906111-47906157)
chr1 (2-47)||(17325026-17325071)
chr1 (1-46)||(27337332-27337377)
chr1 (1-44)||(2949617-2949660)
chr1 (1-44)||(6996178-6996221)
chr1 (1-44)||(26520516-26520559)
chr1 (1-44)||(48665007-48665050)
chr1 (1-47)||(39931917-39931963)
[»] chr7 (30 HSPs)
chr7 (1-47)||(24258312-24258358)
chr7 (1-48)||(7092566-7092613)
chr7 (1-48)||(21990006-21990053)
chr7 (1-47)||(1606326-1606372)
chr7 (1-47)||(3035570-3035616)
chr7 (1-47)||(3677133-3677179)
chr7 (1-47)||(11757080-11757126)
chr7 (1-47)||(13099864-13099910)
chr7 (1-47)||(20299310-20299356)
chr7 (1-47)||(21470682-21470728)
chr7 (1-47)||(28487404-28487450)
chr7 (1-47)||(31156299-31156345)
chr7 (1-47)||(38396141-38396187)
chr7 (1-47)||(43253914-43253960)
chr7 (1-46)||(47865483-47865528)
chr7 (1-48)||(28485416-28485463)
chr7 (1-47)||(1849820-1849866)
chr7 (1-47)||(7470420-7470466)
chr7 (1-47)||(7472373-7472419)
chr7 (5-47)||(18345396-18345438)
chr7 (1-47)||(20297214-20297260)
chr7 (1-47)||(20625889-20625935)
chr7 (1-47)||(20629780-20629826)
chr7 (1-47)||(20642199-20642245)
chr7 (1-47)||(37412515-37412561)
chr7 (1-47)||(42331392-42331438)
chr7 (1-45)||(38393838-38393882)
chr7 (1-48)||(7094813-7094860)
chr7 (1-43)||(7352049-7352091)
chr7 (1-43)||(7349670-7349712)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-48)||(79038-79085)
[»] chr6 (10 HSPs)
chr6 (1-48)||(2629277-2629324)
chr6 (1-47)||(5275727-5275773)
chr6 (1-47)||(12195903-12195949)
chr6 (1-47)||(26932957-26933003)
chr6 (1-43)||(17011931-17011973)
chr6 (1-47)||(18317906-18317952)
chr6 (1-47)||(19704964-19705010)
chr6 (1-47)||(30034995-30035041)
chr6 (1-47)||(30967078-30967124)
chr6 (1-43)||(17852421-17852463)
[»] chr4 (12 HSPs)
chr4 (1-48)||(44600226-44600273)
chr4 (1-47)||(5100898-5100944)
chr4 (1-47)||(14787820-14787866)
chr4 (1-47)||(17662625-17662671)
chr4 (1-47)||(19322595-19322641)
chr4 (1-47)||(22132786-22132832)
chr4 (1-47)||(24348113-24348159)
chr4 (1-47)||(22135018-22135064)
chr4 (1-47)||(56030344-56030390)
chr4 (7-47)||(38890517-38890557)
chr4 (1-47)||(30136470-30136516)
chr4 (1-47)||(53405025-53405071)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-47)||(11860-11906)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-47)||(51864-51910)
[»] chr8 (8 HSPs)
chr8 (1-47)||(15809117-15809163)
chr8 (1-47)||(181438-181484)
chr8 (1-47)||(3873906-3873952)
chr8 (1-47)||(28283612-28283658)
chr8 (1-47)||(43530026-43530072)
chr8 (1-47)||(608625-608671)
chr8 (1-43)||(41382574-41382616)
chr8 (1-46)||(41384648-41384692)
[»] chr5 (14 HSPs)
chr5 (1-47)||(10586684-10586730)
chr5 (1-47)||(18468853-18468899)
chr5 (1-47)||(18509706-18509752)
chr5 (1-47)||(25803862-25803908)
chr5 (1-47)||(27910290-27910336)
chr5 (1-47)||(27912374-27912420)
chr5 (1-47)||(3373429-3373475)
chr5 (1-47)||(18466528-18466574)
chr5 (1-47)||(18511601-18511647)
chr5 (1-47)||(15552080-15552126)
chr5 (2-48)||(26097579-26097625)
chr5 (5-47)||(40221366-40221408)
chr5 (1-47)||(18596492-18596538)
chr5 (1-47)||(26098640-26098686)
[»] chr3 (14 HSPs)
chr3 (1-47)||(455728-455774)
chr3 (1-47)||(458105-458151)
chr3 (1-47)||(746577-746623)
chr3 (1-47)||(1313237-1313283)
chr3 (1-47)||(10621926-10621972)
chr3 (1-47)||(25533262-25533308)
chr3 (1-47)||(27636011-27636057)
chr3 (1-47)||(42992108-42992154)
chr3 (1-47)||(51943197-51943243)
chr3 (1-47)||(53915881-53915927)
chr3 (1-47)||(4104282-4104328)
chr3 (1-47)||(42990107-42990153)
chr3 (1-47)||(53918049-53918095)
chr3 (5-43)||(41848963-41849001)
[»] chr2 (5 HSPs)
chr2 (1-47)||(23452628-23452674)
chr2 (1-47)||(42452604-42452650)
chr2 (1-47)||(35215983-35216029)
chr2 (1-47)||(35218364-35218410)
chr2 (7-47)||(42923893-42923933)
[»] scaffold0511 (1 HSPs)
scaffold0511 (1-47)||(1890-1936)
[»] scaffold0468 (1 HSPs)
scaffold0468 (1-47)||(2022-2068)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 45693815 - 45693666
Alignment:
Q  63 gtatgagaggaaacaattgtgatcaagaagaagcagcgacttatattccttcaaacaccacctctgctgacctatattcctttcgatatcattgtagaaa 162  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45693815 gtatgagaggaaacaaccgtgatcaagaagaagcagcgacttatattccttcaaacaccacctctgctgacctatattcctttcgatatcattgtcgaaa 45693716  T
Q  163 tattgtgtagactcccggtcaag-ttcttccacaactccgctgcatatgc 211  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  45693715 tattgtgtagactcccggtcaagtttcttctacaactccgctgcatatgc 45693666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28998689 - 28998643
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28998689 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 28998643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29004405 - 29004359
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  29004405 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 29004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31735960 - 31735914
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31735960 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 31735914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46432164 - 46432118
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  46432164 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 46432118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27339571 - 27339526
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaagga 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  27339571 aaagggaatattatatttttgatgcaaatattctttcactgaagga 27339526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2510768 - 2510721
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2510768 aaagagaatattatatttttgatgcaaatattctttcactgaaggagg 2510721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21948628 - 21948581
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  21948628 aaagggaatattatatttttgatgcaaatattctttcacagaaggagg 21948581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6115525 - 6115479
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  6115525 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 6115479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9459858 - 9459812
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9459858 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 9459812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9463685 - 9463639
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9463685 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 9463639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15295284 - 15295238
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  15295284 aaagcgaatattatatttttgatgcaaatattctttcactgaaggag 15295238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24325502 - 24325548
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  24325502 aaagtgaatattatatttttgatgcaaatattctttcactgaaggag 24325548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47906111 - 47906157
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  47906111 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 47906157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 17325071 - 17325026
Alignment:
Q  2 aagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  17325071 aagggaatattatattttttatgcaaatattctttcactgaaggag 17325026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27337377 - 27337332
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaagga 46  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||    
T  27337377 aaagggaatattatatttttgatgcaaatattctttaactgaagga 27337332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2949660 - 2949617
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaag 44  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  2949660 aaagggaatattatatttttgatacaaatattctttcactgaag 2949617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6996178 - 6996221
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaag 44  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  6996178 aaagggaatattatatttttgttgcaaatattctttcactgaag 6996221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26520559 - 26520516
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaag 44  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  26520559 aaagggaatattatatttttgatgcaaatattctttcaccgaag 26520516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 48665007 - 48665050
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaag 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  48665007 aaagggaatattatatttttgatgcaaatattctttcattgaag 48665050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39931917 - 39931963
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    ||||||||||||||| |||||||| ||||||||||| | ||||||||    
T  39931917 aaagggaatattatacttttgatgcaaatattcttttattgaaggag 39931963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24258312 - 24258358
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24258312 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 24258358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7092613 - 7092566
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  7092613 aaagggaatattatatttttgatgcaaatattctttcactgaaggagg 7092566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21990006 - 21990053
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  21990006 aaagggaatattatatttttgatgcaaatattctttcactgaaggagg 21990053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1606326 - 1606372
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  1606326 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 1606372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3035570 - 3035616
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3035570 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 3035616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3677133 - 3677179
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3677133 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 3677179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11757080 - 11757126
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11757080 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 11757126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13099910 - 13099864
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  13099910 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 13099864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20299310 - 20299356
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  20299310 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 20299356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21470728 - 21470682
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21470728 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 21470682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28487404 - 28487450
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28487404 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 28487450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31156345 - 31156299
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31156345 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 31156299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38396141 - 38396187
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  38396141 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 38396187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43253960 - 43253914
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  43253960 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 43253914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47865483 - 47865528
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaagga 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  47865483 aaagggaatattatatttttgatgcaaatattctttcactgaagga 47865528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28485416 - 28485463
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  28485416 aaagggaatattatatttttgatgcaaatattctttcaccgaaggagg 28485463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1849820 - 1849866
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  1849820 aaagggaatattatatttttgatgcagatattctttcactgaaggag 1849866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7470466 - 7470420
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7470466 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 7470420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7472419 - 7472373
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7472419 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 7472373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 18345396 - 18345438
Alignment:
Q  5 ggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  18345396 ggaatattatatttttgatgcaaatattctttcactgaaggag 18345438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20297214 - 20297260
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  20297214 aaagggaatattatatttttgatgcaaatattctttcaccgaaggag 20297260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20625889 - 20625935
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20625889 aaagggaatattatatttttgatgcaaatattttttcactgaaggag 20625935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20629780 - 20629826
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20629780 aaagggaatattatatttttgatgcaaatattttttcactgaaggag 20629826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20642199 - 20642245
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20642199 aaagggaatattatatttttgatgcaaatattttttcactgaaggag 20642245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37412561 - 37412515
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||    
T  37412561 aaagggaatattatatttttgatgcaaatattcttccactgaaggag 37412515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42331438 - 42331392
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  42331438 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 42331392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38393838 - 38393882
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaagg 45  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  38393838 aaagggaatgttatatttttgatgcaaatattctttcactgaagg 38393882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7094860 - 7094813
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||    
T  7094860 aaaggaaatattatattttttatgcaaatattctttcactgaaggagg 7094813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7352091 - 7352049
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaa 43  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  7352091 aaagggaatattatatttttgaggcaaatattctttcactgaa 7352049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7349712 - 7349670
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaa 43  Q
    |||| ||||||||||||||||| | ||||||||||||||||||    
T  7349712 aaagagaatattatatttttgaggcaaatattctttcactgaa 7349670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 79038 - 79085
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  79038 aaagggaatattatatttttgatgcaaatattctttcactgaaggagg 79085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2629324 - 2629277
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2629324 aaagggaatattatatttttgatgcaaatattctttcactgaaggagg 2629277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5275773 - 5275727
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5275773 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 5275727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12195949 - 12195903
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  12195949 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 12195903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26933003 - 26932957
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26933003 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 26932957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17011931 - 17011973
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaa 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  17011931 aaagggaatattatatttttgatgcaaatattctttcactgaa 17011973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18317906 - 18317952
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18317906 aaagggaatattatattttttatgcaaatattctttcactgaaggag 18317952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19705010 - 19704964
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  19705010 aaagggaatattatattttttatgcaaatattctttcactgaaggag 19704964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30035041 - 30034995
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  30035041 aaagggaatattatatttttgatgcagatattctttcactgaaggag 30034995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30967078 - 30967124
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  30967078 aaagcgaatattatatttttgatgcaaatattctttcactgaaggag 30967124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17852421 - 17852463
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaa 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  17852421 aaagggaatattatatttttgatgcaaatattatttcactgaa 17852463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44600273 - 44600226
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  44600273 aaagggaatattatatttttgatgcaaatattctttcactgaaggagg 44600226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5100898 - 5100944
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5100898 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 5100944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14787866 - 14787820
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  14787866 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 14787820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17662671 - 17662625
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  17662671 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 17662625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19322595 - 19322641
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  19322595 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 19322641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22132832 - 22132786
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  22132832 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 22132786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24348113 - 24348159
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  24348113 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 24348159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22135064 - 22135018
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  22135064 aaagggaatattatatttttgattcaaatattctttcactgaaggag 22135018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 56030344 - 56030390
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||    
T  56030344 aaagggaatattatatttttggtgcaaatattctttcactgaaggag 56030390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 38890557 - 38890517
Alignment:
Q  7 aatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  38890557 aatattatatttttgatgcaaatattctttcactaaaggag 38890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30136470 - 30136516
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||  ||||||||||||| ||||||||    
T  30136470 aaagagaatattatatttttgattcaaatattctttcattgaaggag 30136516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53405025 - 53405071
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    ||||| || ||||||||||||||| ||||||||||||||| ||||||    
T  53405025 aaaggaaaaattatatttttgatgcaaatattctttcactaaaggag 53405071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11906 - 11860
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11906 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 11860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51864 - 51910
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  51864 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 51910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15809117 - 15809163
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  15809117 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 15809163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 181438 - 181484
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  181438 aaagggaatattatatttttgatgcaaatattctttcactaaaggag 181484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3873906 - 3873952
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3873906 aaagagaatattatatttttgatgcaaatattctttcactgaaggag 3873952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28283658 - 28283612
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28283658 aaagtgaatattatatttttgatgcaaatattctttcactgaaggag 28283612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43530026 - 43530072
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||    
T  43530026 aaagggaatattatattttttatgctaatattctttcactgaaggag 43530072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 608625 - 608671
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||| ||| ||| ||||||||||||||||||||||    
T  608625 aaagagaatattatatattttatgcaaatattctttcactgaaggag 608671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41382574 - 41382616
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaa 43  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||    
T  41382574 aaaggaaatattatattttttatgcaaatattctttcactgaa 41382616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41384648 - 41384692
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaagga 46  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||    
T  41384648 aaagggaatattatattttt-atgcaaatattctttcattgaagga 41384692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10586684 - 10586730
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  10586684 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 10586730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18468853 - 18468899
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  18468853 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 18468899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18509752 - 18509706
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  18509752 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 18509706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25803862 - 25803908
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  25803862 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 25803908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27910290 - 27910336
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  27910290 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 27910336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27912374 - 27912420
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  27912374 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 27912420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3373475 - 3373429
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  3373475 aaagggaatattatatttttgatgcaaatattttttcactgaaggag 3373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18466528 - 18466574
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  18466528 aaagggaatattatatttttgatgcaaatattctttcactaaaggag 18466574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18511647 - 18511601
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  18511647 aaaggaaatattatatttttgatgcaaatattctttcactgaaggag 18511601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15552080 - 15552126
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||||    
T  15552080 aaagggaatatgacatttttgatgcaaatattctttcactgaaggag 15552126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 26097579 - 26097625
Alignment:
Q  2 aagggaatattatatttttgatgtaaatattctttcactgaaggagg 48  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||    
T  26097579 aaggaaatgttatatttttgatgcaaatattctttcactgaaggagg 26097625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 40221366 - 40221408
Alignment:
Q  5 ggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  40221366 ggaatattatatttttgatgcaaatattctttcactgcaggag 40221408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18596492 - 18596538
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||  ||||||||| ||||||||||||    
T  18596492 aaagagaatattatatttttgatacaaatattctatcactgaaggag 18596538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26098686 - 26098640
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||  ||| ||||||||| ||||||||    
T  26098686 aaagggaatattatatttttgatacaaaaattctttcattgaaggag 26098640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 455728 - 455774
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  455728 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 455774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 458105 - 458151
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  458105 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 458151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 746577 - 746623
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  746577 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 746623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1313237 - 1313283
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  1313237 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 1313283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10621972 - 10621926
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  10621972 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 10621926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25533262 - 25533308
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  25533262 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 25533308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27636057 - 27636011
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  27636057 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 27636011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42992108 - 42992154
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  42992108 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 42992154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51943197 - 51943243
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  51943197 aaagggaatattatatttttgatgtaaatattctttcattgaaggag 51943243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 53915927 - 53915881
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  53915927 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 53915881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4104328 - 4104282
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  4104328 aaagggaatattatattttttatgcaaatattctttcactgaaggag 4104282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42990107 - 42990153
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  42990107 aaagagaatattatatttttgatgcaaatattctttcactgaaggag 42990153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 53918095 - 53918049
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  53918095 aaagggaatattatatttttgatgcaaatattctttcattgaaggag 53918049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 41848963 - 41849001
Alignment:
Q  5 ggaatattatatttttgatgtaaatattctttcactgaa 43  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  41848963 ggaatattatatttttgatgcaaatattctttaactgaa 41849001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23452674 - 23452628
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  23452674 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 23452628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42452604 - 42452650
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  42452604 aaagggaatattatatttttgatgcaaatattctttcactgaaggag 42452650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35216029 - 35215983
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  35216029 aaagggaatattatatttttgatgcagatattctttcactgaaggag 35215983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35218410 - 35218364
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  35218410 aaagagaatattatatttttgatgcaaatattctttcactgaaggag 35218364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 42923933 - 42923893
Alignment:
Q  7 aatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  42923933 aatattatatttttgatgcaaatattctttcactgaaggag 42923893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1890 - 1936
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1890 aaagggaatattatattttttatgcaaatattctttcactgaaggag 1936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2068 - 2022
Alignment:
Q  1 aaagggaatattatatttttgatgtaaatattctttcactgaaggag 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  2068 aaagagaatattatatttttgatgcaaatattctttcactgaaggag 2022  T

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