View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_105 (Length: 225)
Name: NF3069_low_105
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_105 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 43381750 - 43381940
Alignment:
| Q |
31 |
gcaaaatttcaggtgtttgatcatataatccgttattattaagatgtccgtccaccaaaaaataaagccttagctgacactgtatcaactatgcgtacat |
130 |
Q |
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| T |
43381750 |
gcaaaatttcaggtgtttgatcgtataatccgttattattaagatgtcc----accaaaaaataaagccttagctgacactgtatcaactatacgtacat |
43381845 |
T |
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| Q |
131 |
caaggaacaactaactatttaactctatggaatcctcaatgccactacaaagattatggtacaactcaaataccttactcaggacagaacaactt |
225 |
Q |
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| T |
43381846 |
caaggaacaactaactatttaactctagggaatcctcaatgccactacaaagattatggtacaactcaaataccttactcaggacagaacaactt |
43381940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 25871517 - 25871647
Alignment:
| Q |
83 |
caccaaaaaataaagccttagctgacactgtatcaactatgcgtacatcaaggaacaactaactatttaactctatggaatcctcaatgccactacaaag |
182 |
Q |
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| T |
25871517 |
caccaaaaaataatgccttagctgacactgtatcaactatgcgtacatcaaggaacaacta----tttaattcgagggaatcctcaatgccactacaaag |
25871612 |
T |
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| Q |
183 |
attatggtacaactcaaataccttactcaggacag |
217 |
Q |
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| T |
25871613 |
attatggtacaactcaaataccttaatcaggacag |
25871647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25871269 - 25871347
Alignment:
| Q |
1 |
gtcaacaacatgatcacccattttgttcgtgcaaaatttcaggtgtttgatcatataatccgttattattaagatgtcc |
79 |
Q |
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| T |
25871269 |
gtcaacaacacgatcacccattttgttcgtgcaaaatttcaggtgtttgatcatataatccgttattattaagatgtcc |
25871347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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