View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_low_106 (Length: 223)
Name: NF3069_low_106
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_106 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 3949877 - 3950021
Alignment:
| Q |
7 |
gtagagtctctatctatctctatgtttctctaccatgattttccaaaagaaagttccatttcatgcattggtacattctaagtagaaagtgacttgctca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3949877 |
gtagagtctctatctatctctatgtttctctaccatgattttccaaaagaaagttccatttcatgcattggttcattctaagtagaaagtgacttgctca |
3949976 |
T |
|
| Q |
107 |
ttaaacatcatatttacaattacaccaaattcatagttaaggaaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949977 |
ttaaacatcatatttacaattacaccaaattcatagttaaggaaa |
3950021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University