View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_107 (Length: 223)
Name: NF3069_low_107
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_107 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 44852374 - 44852157
Alignment:
| Q |
5 |
cgtaactcataagatctgtgttcagttgtaagatgtgagtagcctatatgttaagagttgggctagagtccatctgtgactactatatatcatacatatg |
104 |
Q |
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| T |
44852374 |
cgtaactcataagatctgtgttcagttgtaagatgcgattagcctatatgtta-gagttgggctagagtccatctgtgactactatatatcatacatatg |
44852276 |
T |
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| Q |
105 |
catttgtctacatccatacgtgatttcatggtgcgagaaaacattatttttcttgtcaattacaaggacacaaaccctggacatggacactgatattgtc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852275 |
catttgtctacatccatacgtgatttcatggtgcgagaaaacattacttttcttgtcaattacaaggacacaaaccctggacatggacactgatattgtc |
44852176 |
T |
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| Q |
205 |
caaaatgtaagacaacaac |
223 |
Q |
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||||||||||||||||||| |
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| T |
44852175 |
caaaatgtaagacaacaac |
44852157 |
T |
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