View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_low_109 (Length: 217)
Name: NF3069_low_109
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_109 |
 | |
|
| [»] scaffold0209 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 30654673 - 30654572
Alignment:
| Q |
1 |
tgtaacaaggaaacgaaaatttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatcggggataactcctcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30654673 |
tgtaacaaggaaacgaaaatttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatcggggataactcctcg |
30654574 |
T |
|
| Q |
101 |
cc |
102 |
Q |
| |
|
|| |
|
|
| T |
30654573 |
cc |
30654572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 4376923 - 4376989
Alignment:
| Q |
19 |
atttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatc |
85 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4376923 |
atttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatc |
4376989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 30654510 - 30654472
Alignment:
| Q |
166 |
tggcagtttcggaagatgagaaccatcatagacccaacc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30654510 |
tggcagtttcggaagatgagaaccatcatagacccaacc |
30654472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 8834458 - 8834541
Alignment:
| Q |
2 |
gtaacaaggaaacgaaaatttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatc |
85 |
Q |
| |
|
|||||||| |||| ||| ||||||||||| | ||||||| |||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
8834458 |
gtaacaagaaaacaaaattttgtccaaagctatgacatctagtagtgttaggcaacaaaattaatccctggcctatatgtaatc |
8834541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7325 - 7241
Alignment:
| Q |
1 |
tgtaacaaggaaacgaaaatttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatc |
85 |
Q |
| |
|
||||||| | |||| ||||||||||||||| | ||||||| | |||||||| ||||||| |||||||||| | |||||||||||| |
|
|
| T |
7325 |
tgtaacaggaaaacaaaaatttgtccaaagctgtgacatctaatagtgttatgcaacaacactaatccctaacctatatgtaatc |
7241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20779 - 20695
Alignment:
| Q |
1 |
tgtaacaaggaaacgaaaatttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatc |
85 |
Q |
| |
|
||||||| | |||| ||||||||||||||| | ||||||| | |||||||| ||||||| |||||||||| | |||||||||||| |
|
|
| T |
20779 |
tgtaacaggaaaacaaaaatttgtccaaagctgtgacatctaatagtgttatgcaacaacactaatccctaacctatatgtaatc |
20695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University