View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_11 (Length: 576)
Name: NF3069_low_11
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_11 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 82 - 403
Target Start/End: Complemental strand, 39928844 - 39928527
Alignment:
| Q |
82 |
atatataaaatatatcaattgtttctatttttaaatgactgatatgtcgagatgacatccggcacgagagcaagaaaaggaaatggtctccatgcagctt |
181 |
Q |
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| T |
39928844 |
atatataaaatatatcaattgtttctatttttaaacgactgatatgtcgagatgacatccggcacgagagcaagaaaaggaaatggtctccg----gctt |
39928749 |
T |
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| Q |
182 |
caagtcacgtcacgccactctcagcaacatatacatacttttattttaatctttccattttatattatcaagaatcattccaagcgaaagtttttcttgg |
281 |
Q |
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| T |
39928748 |
caagtcacgtcacgccactctcagcaacatatacatacttttatttaaatctttccattttatattctcaagaatcattccaagcgaaagtttttcttgg |
39928649 |
T |
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| Q |
282 |
tggatgaacatatgggtcattggtttcccatatgaagaggtacttattttatgattcgaatcttagtttcattcaaactgtccgtgaataataatgcttc |
381 |
Q |
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| T |
39928648 |
tggatgaacatatgggtcattggtttcccatatgaagaggtacttattttatgatttgaatcttagtttcattcaaactgtccgtgaataataatgcttc |
39928549 |
T |
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| Q |
382 |
ttctatggaaggttgttgtcat |
403 |
Q |
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| T |
39928548 |
ttctatgcaaggttgttgtcat |
39928527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 501 - 560
Target Start/End: Complemental strand, 39928411 - 39928352
Alignment:
| Q |
501 |
tagaagagaataggcacgtgtttaatccatttcaaaaacatatttaatcatggtgctttt |
560 |
Q |
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| T |
39928411 |
tagaagagaataggcacgtgtttaatccatttcaaaaacatatttaatcatggtgctttt |
39928352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39928912 - 39928866
Alignment:
| Q |
1 |
attatcttaattgaaatgttaacaaatgtcttaaaagattaatacaa |
47 |
Q |
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| T |
39928912 |
attattttaactgaaatattaacaaatgtcttaaaagattaatacaa |
39928866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 436
Target Start/End: Complemental strand, 39928508 - 39928478
Alignment:
| Q |
406 |
tactactcacacctttcttcaactcttcttg |
436 |
Q |
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| T |
39928508 |
tactactcacacctttcttcaactcttcttg |
39928478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 51421 - 51489
Alignment:
| Q |
122 |
gatatgtcgagatgacatccggcacgagagcaagaaaaggaaatggtctccatgcagcttcaagtcacg |
190 |
Q |
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| T |
51421 |
gatatgccgagatgacatccagcacgagagcaagaaaaggaaatggtctccgtgcagcttcaagtcacg |
51489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 24994737 - 24994805
Alignment:
| Q |
122 |
gatatgtcgagatgacatccggcacgagagcaagaaaaggaaatggtctccatgcagcttcaagtcacg |
190 |
Q |
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| T |
24994737 |
gatatgccgagatgacatccagcacgagagcaagaaaaggaaatggtctccgtgcagcttcaagtcacg |
24994805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 34074626 - 34074573
Alignment:
| Q |
418 |
ctttcttcaactcttcttgcagatgcaatg-aagttagtttattgagagattag |
470 |
Q |
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| T |
34074626 |
ctttcttcaactcttcttgctgatgcaatgtgagttagtttcttgagagcttag |
34074573 |
T |
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