View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_110 (Length: 213)
Name: NF3069_low_110
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 19922938 - 19922769
Alignment:
| Q |
31 |
ggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctatcttccatttgaaacagaagcatagagtgaaatggttcagagttgca |
130 |
Q |
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| T |
19922938 |
ggatgaactggaaatggttcgggtaaatgtcttcttcccaagatctgttgctatcttccatttgaaacagaagcagagagtgaaatggttcaaagttgca |
19922839 |
T |
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| Q |
131 |
aagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtaaagaaaagt |
200 |
Q |
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| T |
19922838 |
aagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtcaagaaaagt |
19922769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 19921892 - 19922075
Alignment:
| Q |
16 |
gaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctatcttccatttgaaacagaagcatagagtgaaa |
115 |
Q |
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| T |
19921892 |
gaaactgggcgaaatg-atgaactggaaatggttcgggtaaatgtcttcttcccaagatctgttgctatctaacatttgaaacataagcagagagtgaaa |
19921990 |
T |
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| Q |
116 |
tggttcagagttgcaaagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtaaagaaaagt |
200 |
Q |
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| T |
19921991 |
tggttcaaagttgcaaagtacaatgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagtcaagaaaagt |
19922075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 6390148 - 6389971
Alignment:
| Q |
16 |
gaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctatcttccatttgaaacagaagcatagagtgaaa |
115 |
Q |
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| T |
6390148 |
gaaactgagcgaaatggatgaactggaaatggttccagtaaatgttttcttccaaagatctgctgctatcttccatttgaaacagaagcagagagtgaaa |
6390049 |
T |
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| Q |
116 |
tggttcagagttgcaaagtacaa----tgacagggtctagagttcaagaagagaggtaaagtagagtataggctctagta |
191 |
Q |
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| T |
6390048 |
tggttcaaaggtgcaaagtacagagagtgacagggtctag--ttcaagaagagacgtaaagtacagcataggctctagta |
6389971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 6397254 - 6397193
Alignment:
| Q |
16 |
gaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctg |
77 |
Q |
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| T |
6397254 |
gaaattgggtgaaatggatgaactggaaatgggtccagtaaatatcttcttcccaagatctg |
6397193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 6403391 - 6403282
Alignment:
| Q |
26 |
gaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgcta---tcttccatttgaaacagaagcatagagt-gaaatggttc |
121 |
Q |
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| T |
6403391 |
gaaatggatgaattgaaaatggttccagtaaatatcttcctcccaagatctacttccatcttcttccatttgaaacagaagcggagagtggaaatggttc |
6403292 |
T |
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| Q |
122 |
agagttgcaa |
131 |
Q |
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| T |
6403291 |
aaagttgcaa |
6403282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 6419744 - 6419625
Alignment:
| Q |
16 |
gaaactgggcgaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgctat---cttccatttgaaacagaagcatagagt- |
111 |
Q |
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|||| |||| |||||| ||||||| |||| |||||||||||| ||| ||||||| |||||| | | || ||||||||| ||| ||||||| ||||| |
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| T |
6419744 |
gaaattgggtgaaatgaatgaactgaaaattgttccagtaaatatcttcttcccaggatctgcttccatctacttccattttaaagagaagcagagagtg |
6419645 |
T |
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| Q |
112 |
gaaatggttcagagttgcaa |
131 |
Q |
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| T |
6419644 |
gaaatggttcaaagttgcaa |
6419625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 6414319 - 6414263
Alignment:
| Q |
26 |
gaaatggatgaacttgaaatggttccagtaaatgtctacttcccaagatctgttgct |
82 |
Q |
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| T |
6414319 |
gaaatggatgaactgaaaatggttccagtaaatctcttcctcccaagatttgttgct |
6414263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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