View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_13 (Length: 561)
Name: NF3069_low_13
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 15630651 - 15631160
Alignment:
| Q |
18 |
actaataccatgtgaaaggttaaccttgaactctattgatgaat----atagaaaagcttgaatatacaagaagctaatgaactgaaaaattgtattcac |
113 |
Q |
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| T |
15630651 |
actaataccatgtgaaaggttaaccttgaactctattgatgaatgaatatataaaagcttgaatatacaagaagctaatgaactgaaaaattgtatttac |
15630750 |
T |
|
| Q |
114 |
aaaatttgaattgtgcattacatacagtgcatatgctctatatgactctaactagaattagttattaatccctactaacttagaaaattgtctaacaaac |
213 |
Q |
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| T |
15630751 |
aaaatttgaattgtgcattacatacagtgcatatgctctatatgactctaactagaattagttattaatccctactaacttagaaaattgtctaacaaac |
15630850 |
T |
|
| Q |
214 |
gcagtttgttagctagtcaactagtcaatgacttgcgatacaagtaaccatctaagcttttttaattcctcaatcaacacagatactctactctatttca |
313 |
Q |
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| T |
15630851 |
gcagtttgttagctagtcaactagtcagtgacttgcgatacaagtaaccatctaagcttttttaattccacaatcaacacacatactctactctacttta |
15630950 |
T |
|
| Q |
314 |
tcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgctttgcatctcgcaaagtaaagtatcgctcattttggtgaatgccat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15630951 |
tcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgctttgcatctcgcagagtaaagtatcgctcattttggtgaatgccat |
15631050 |
T |
|
| Q |
414 |
agattgcacacgtaactagtttgataatatcaagtgctcgttagggtattcatctccaagccaccaaggacttttcccacccttgatcacgac-ttcgca |
512 |
Q |
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| T |
15631051 |
agattgcacacgtaactaatttgataatatcaagtgctcgttagggtattcatctccaagccaccaaggacttttcccacccttgatcacgactttggca |
15631150 |
T |
|
| Q |
513 |
tctccctcat |
522 |
Q |
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| T |
15631151 |
tctccctcat |
15631160 |
T |
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