View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_14 (Length: 554)
Name: NF3069_low_14
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 14435364 - 14434870
Alignment:
| Q |
16 |
atcaccctaccatgcaccaacgaactcataatcctccaaagtctaacaacccttaccctgatattccacgccattctcggtggacgaacattcaacaaac |
115 |
Q |
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| T |
14435364 |
atcaccctaccacgcaccaacgaactcataatcctccaaagtctaacaacccttaccctgatattccacgccattctcggtggacgaacattcaacaaac |
14435265 |
T |
|
| Q |
116 |
ttgttatgggaggagacattgtgggaaaatatgctggaaaagttttaaataaaagagtgataggtgaaatctactccaaacccatgtgtgatacttatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14435264 |
ttgttatgggaggagacattgtgggaaaatatgctggaaattttttagagaaaagagtgataggtgaaatctactccaaacccatctgtgatacttatat |
14435165 |
T |
|
| Q |
216 |
aaagaataagggtgcaagcactgtgagcttcaaaaaagtgaacaacaactctctgagaacggaccccaaaattcaaaagtaagcttgcaaaatgaaaaat |
315 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14435164 |
aaagaataatggtgcaagcactgtgagcttcaaaaaattgaacaacaactctctgagaacggaccccaaaattcaaaagtaagcttacaaaatgaaaaat |
14435065 |
T |
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| Q |
316 |
aaaatgaggtcaactgtaatgatgaaaattgtcacgtccacatatgtcaactttactgtctgaagcagtgggactctaacgtgcatttggaattgatgga |
415 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||| |
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| T |
14435064 |
aaaatgaggtcaactgtaaagatgaaaattgtcacgtccacatgtgtcaactttactgtttgaagtagtgggactctcacatgcatttggaattgatgga |
14434965 |
T |
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| Q |
416 |
atataaaaatcaccaatgataatagctcaatgagcccaaggctagtaagataacatccaaagtaaaaataaagggtaaataaattggagtattag |
510 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14434964 |
atataaaaatcaccaaagataatagctcaatgagcccaaggctagtaagataacatccaaagtaaaaataaagggtaaataaattggagtattag |
14434870 |
T |
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