View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_16 (Length: 522)
Name: NF3069_low_16
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 37435792 - 37435280
Alignment:
| Q |
1 |
cttatggttattctcttgcagaaatttgcaatcaactgttggaattctatgaggagattggcattccactatcacaaggaagcgaagcagaagtggctgt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37435792 |
cttattgttattctcttgcagaaatttgcaatcaactgctggaattctatgaggagattggcattccactatcacaaggaagtgaagcagaagtggctgt |
37435693 |
T |
|
| Q |
101 |
tggagggagaacaaagtctcctgcctcagatgagcaggcatggaaacaaattccatcccatccagtcccccagcactcatctgcagaaaatagtgcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37435692 |
tggagggagaacaaagtctcctgcctcagatgagcaggcatggaaacaaattccatcccatccagtcccccagcactcatctgcagaaaatagtgcaata |
37435593 |
T |
|
| Q |
201 |
caatataggggaactaaaaaccaaagcaccggtgggagtaaagaaatgggcagtgacattaccgatcgcaagatggacttgaaaaccaaggattcacaga |
300 |
Q |
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| T |
37435592 |
caatataggggaactaaaaaccaaagcaccggtgggagtaaagaaatgggcagtgacattaccgatcgcaagatggacttgaaaaccaaggattcacaga |
37435493 |
T |
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| Q |
301 |
actcaaaaaagttgactcatatagtgtccagagaccgagatagaatggttggtggaaatctggatattcgggaaagtccacttggctactcacccaaaga |
400 |
Q |
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| T |
37435492 |
actcaaaaaagttgcctcatatagtgtccagagaccgagatagaatggttggtggaaatctggatcttcgggaaagtccacttggctactcacccaaaga |
37435393 |
T |
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| Q |
401 |
agcagtgaagatgattgacaaagacaagtcaaaagttgcattagaaaaaagcagaaatgaacgaggtgaaatcataataaagaaagatgcaatggatgag |
500 |
Q |
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| T |
37435392 |
agcagtgaagatgattgacaaagacaagtcaaaagttgcattagaaaaaagcagaaatgaacgaggtgaaatcataataaagaaagatgtaatggatgag |
37435293 |
T |
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| Q |
501 |
gatgatctcattg |
513 |
Q |
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||||||| ||||| |
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| T |
37435292 |
gatgatcacattg |
37435280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 37429352 - 37429443
Alignment:
| Q |
1 |
cttatggttattctcttgcagaaatttgcaatcaactgttggaattctatgaggagattggcattccactatcacaaggaagcgaagcagaa |
92 |
Q |
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||||||||||||||||||||||| || || ||||| |||||||| |||| ||| ||| | ||||||| |||||||| ||| ||||||||| |
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| T |
37429352 |
cttatggttattctcttgcagaagttagctatcaaatgttggaactctacgagcagaaaagaattccaccatcacaagcaagtgaagcagaa |
37429443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 506
Target Start/End: Original strand, 37429703 - 37429821
Alignment:
| Q |
388 |
actcacccaaagaagcagtgaagatgattgacaaagacaagtcaaaagttgcattagaaaaaagcagaaatgaacgaggtgaaatcataataaagaaaga |
487 |
Q |
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||||||| ||||||||||| |||||| ||| |||| ||||| ||| | ||| || | | |||| ||||| |||| ||||||| ||| | |||| ||||| |
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| T |
37429703 |
actcacctaaagaagcagtccagatgactgataaagtcaagttaaaggctgcgtttgtagaaagaagaaaggaacaaggtgaagtcacagtaaaaaaaga |
37429802 |
T |
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| Q |
488 |
tgcaatggatgaggatgat |
506 |
Q |
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|| ||||||||| |||||| |
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| T |
37429803 |
tgtaatggatgacgatgat |
37429821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 32506481 - 32506548
Alignment:
| Q |
446 |
aaaaagcagaaatgaacgaggtgaaatcataataaagaaagatgcaatggatgaggatgatctcattg |
513 |
Q |
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| T |
32506481 |
aaaaaggagaaaggaacgaggggaaatgacaataaagaaagatgtaatggatgaggatgatctcattg |
32506548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 513
Target Start/End: Original strand, 32506584 - 32506689
Alignment:
| Q |
408 |
aagatgattgacaaagacaagtcaaaagttgcattagaaaaaagcagaaatgaacgaggtgaaatcataataaagaaagatgcaatggatgaggatgatc |
507 |
Q |
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|||||||||||||||||||| ||| || |||||||||| ||||| |||||||||||||| | ||||||||||||| |||||| |||||||||| |
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| T |
32506584 |
aagatgattgacaaagacaaagtaaagaccgcgttagaaaaaatgagaaaggaacgaggtgaaatgacaataaagaaagatataatggacgaggatgatc |
32506683 |
T |
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| Q |
508 |
tcattg |
513 |
Q |
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|||||| |
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| T |
32506684 |
tcattg |
32506689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 32505959 - 32506041
Alignment:
| Q |
11 |
ttctcttgcagaaatttgcaatcaactgttggaattctatgaggagattggcattccactatcacaaggaagcgaagcagaag |
93 |
Q |
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||||||||||||| || |||||||| |||||||| | |||||| ||| | | ||||||| |||||||||||| |||||||||| |
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| T |
32505959 |
ttctcttgcagaagttagcaatcaaatgttggaactttatgagcagaatagaattccacaatcacaaggaagtgaagcagaag |
32506041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 32506180 - 32506269
Alignment:
| Q |
217 |
aaaaccaaagcaccggtgggagtaaagaaatgggcagtgacattaccgatcgcaagatggacttgaaaaccaaggattcacagaactcaa |
306 |
Q |
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|||||||||||| | ||||||| ||||||||| ||||||||||| |||| ||||||||||| | |||||| |||||| |||| ||||| |
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| T |
32506180 |
aaaaccaaagcaatgatgggagtgcagaaatgggaagtgacattactgatcacaagatggactcggaaaccagggattctcagacctcaa |
32506269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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