View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_20 (Length: 483)
Name: NF3069_low_20
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 47362806 - 47363257
Alignment:
| Q |
19 |
ctactgtgctcatgttgatggcaagcttagcacctggaagaggaaaccgtaagtgtttcttgtcttagaattttcttatattcagacattcggatgattt |
118 |
Q |
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| T |
47362806 |
ctactgtgctcatgttgatggcaagcttagcacctggaagaggaaaccgtaagtgtttcttgtcttagaattttcttatattcagacattcggatgattt |
47362905 |
T |
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| Q |
119 |
ttctatcaatatcacacacattgtcaaatacagtctagtgattgatagtttcatatatacttgtgatagagtgatataatgatgcttaaataactcgtat |
218 |
Q |
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| T |
47362906 |
ttctatcaatatcacacacattgtcaaatacagtctagtgattgatagtttcatatatacttgtgatagagtgatataatgatgcttaaataactcgtat |
47363005 |
T |
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| Q |
219 |
atgctggcagaatctgttgattgtaactagaagctttctcttttatatattaaatctattattgctacttttgtttgtcaaatttttggttattgcaagt |
318 |
Q |
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| T |
47363006 |
atgctggcagaatctgttgattgtaactagaagctttctcttttatatattaaatctattattgctacttttgtttgtcaaatttttggttattgcaagt |
47363105 |
T |
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| Q |
319 |
atttgcgtgtttgataaacgtgtatgatgatactgaaatttgatgtgagtttgtcc-ttatatgaattatcttcccttgctcccaagaactgaatttttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
47363106 |
atttgcgtgtttgataaacgtgtatgatgatactgaaatttgacgtgagtttgtcctttatatgaattatcttcccttgctcccaagaactgaa-tttct |
47363204 |
T |
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| Q |
418 |
aagttaggtggacaaaagatgaatgttcagaggaggagattgtatacgtgatg |
470 |
Q |
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| T |
47363205 |
acgttaggtggacaaatgatgaatgttcagaggaggagattgtatacgtgatg |
47363257 |
T |
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