View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_24 (Length: 448)
Name: NF3069_low_24
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_24 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 46265686 - 46265847
Alignment:
| Q |
1 |
aatcctttatattttgataaacataactaaaatgtggttaaatagaatgatgaatagtataaatattctcaaaa-aatgaaatgtaaacggtttagtcgt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
46265686 |
aatcctttatattttgataaacataactaaaatgtggttaagtagaataatgaatagtatacatattctaaaaaaaatgaaatgtaaacggtttagtcgt |
46265785 |
T |
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| Q |
100 |
ttagatgaagactaatgttgatttttcacacattctctattttccatgtcacatatatgtat |
161 |
Q |
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| T |
46265786 |
ttagatgaagactaatgttgatttttcacacattctctattttccatgtcacatatatgtat |
46265847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 46023681 - 46023518
Alignment:
| Q |
1 |
aatcctttatattttgataaacataactaaaatgtggttaaatagaatgatgaatagtataaatattctcaaaaaa---tgaaatgtaaacggtttagtc |
97 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||| |
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| T |
46023681 |
aatcgtttatattttgataaacataactaaaatgtggttaaatagaatgatgaatagtatacatattctaaaaaaaaaatgaaatttaaacggtttagtc |
46023582 |
T |
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| Q |
98 |
gtttagatgaagactaatgttgatttttcacacattctctattttccatgtcacatatatgtat |
161 |
Q |
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| T |
46023581 |
gtttagatgaagactaatgttgatttttcacaaattctcaattttccatgtcacatatatgtat |
46023518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 301 - 448
Target Start/End: Complemental strand, 37605946 - 37605796
Alignment:
| Q |
301 |
cacttgtttcgttttccttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactccttatt |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
37605946 |
cacttgtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttctt |
37605847 |
T |
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| Q |
401 |
catctttgta---tgccaccctcatgctattttcggtcgctccacctatct |
448 |
Q |
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| T |
37605846 |
catctttgtacagtgccaccctcatgctattttcggtcgctccacctatct |
37605796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 37606088 - 37606023
Alignment:
| Q |
166 |
aatgataattaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttatg |
231 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37606088 |
aatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttatg |
37606023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 5742432 - 5742511
Alignment:
| Q |
318 |
ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt |
397 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||| | ||| ||||||||| |
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| T |
5742432 |
ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactcctt |
5742511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 33361104 - 33361025
Alignment:
| Q |
318 |
ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt |
397 |
Q |
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|||||||||||||||||| |||||||| || | ||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
33361104 |
ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactcctt |
33361025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 27658118 - 27658260
Alignment:
| Q |
303 |
cttgtttcgttttccttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactccttattca |
402 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
27658118 |
cttgtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttca |
27658217 |
T |
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| Q |
403 |
tctttgta---tgccacc--ctcatgctattttcggtcgctcc |
440 |
Q |
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| T |
27658218 |
tctttgtacagtgccaccctctcatgctattttcggtcactcc |
27658260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 27656838 - 27656908
Alignment:
| Q |
160 |
atcagaaatgataattaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttat |
230 |
Q |
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|||| ||||||||| ||||||||| |||||||||||||| |||| |||||| |||||| |||||||||||| |
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| T |
27656838 |
atcataaatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaatacttat |
27656908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 31559487 - 31559552
Alignment:
| Q |
166 |
aatgataattaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttatg |
231 |
Q |
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| T |
31559487 |
aatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaatacttatg |
31559552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 18085380 - 18085301
Alignment:
| Q |
318 |
ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt |
397 |
Q |
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|||||||||||||||||| |||||||| || | ||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
18085380 |
ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactcctt |
18085301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 1351 - 1272
Alignment:
| Q |
318 |
ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt |
397 |
Q |
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|||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
1351 |
ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactcctt |
1272 |
T |
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