View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_25 (Length: 448)
Name: NF3069_low_25
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 41948586 - 41949033
Alignment:
| Q |
1 |
aaaactgtattagtaaaacttacaaaaacagtgaacaattggaaacatggaaaatgtgaattgatattggcatggaatttttatcccctcgatattactt |
100 |
Q |
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| T |
41948586 |
aaaactgtattagtaaaacttacaaaaacagtgaacaattggaaacatggaaaatgtgaattgatattggcatggaatttttatcccctcgatattactt |
41948685 |
T |
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| Q |
101 |
gaacattcaaaagaaagttgattttcacacacccctnnnnnnnnttgttccagcaaaaactactttgtaaggaaaatgttaggtttaaaagtgcatagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
41948686 |
gaacattcaaaagaaagttgattttcacacacccctaaaaaaaattgttccagcaaaaactactttgtaaggaaaatgttaggtttaaaagtacacagac |
41948785 |
T |
|
| Q |
201 |
agtcctacctacagctgtaataattccactgaataaaacgtgttggcgatgctttttcataatatccttgcctccttcatcccctttattctaatttcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41948786 |
agtcctacctacagctgtaataattccactgaataaaacttgttggcgatgctttttcataatatccttgcctccttcatcccctttattctaatttcaa |
41948885 |
T |
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| Q |
301 |
gaatgtcattatatctatcaaaaatctatatttatggaataccacaatgcaagtgcaacaatacagaggtaataatagtcatttgtaagagacaaattca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41948886 |
gaatgtcattatatctatcaaaaatctatatttatggaataccacaatgcaagtgcaacaatacagaggtaataatagtcatttgtaagagacaaattca |
41948985 |
T |
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| Q |
401 |
ttaaaacctttttagtcttgacatctgcagtgggagtaagcgttggct |
448 |
Q |
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| T |
41948986 |
ttaaaacctttttagtcttgacatctgcagtgggagtaagcgttggct |
41949033 |
T |
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