View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_27 (Length: 435)
Name: NF3069_low_27
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 21537843 - 21537436
Alignment:
| Q |
13 |
aaaatccatgttgtgctcaaagacttgatgatgattaatataacccttaaatgcacccttaaaactgaatgacctcacatatgcagcagatatctgaact |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21537843 |
aaaatccatgttgtgctcaaagacttgatgatgattaatataacccttaaacgcacccttaaaactgaatgacctcacatatggagcagatatctgaact |
21537744 |
T |
|
| Q |
113 |
cttgaatgttgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21537743 |
cttgaatgttgatacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaag |
21537644 |
T |
|
| Q |
213 |
tactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaag |
312 |
Q |
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| T |
21537643 |
tactaagcttcttacattttaagaaaggcatagcataatctttgtcattagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaag |
21537544 |
T |
|
| Q |
313 |
atctatagtttctggaagctttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagtgaaaaagtagg |
412 |
Q |
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| T |
21537543 |
atctatagtttctggaagttttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagg |
21537444 |
T |
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| Q |
413 |
gtgttact |
420 |
Q |
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| T |
21537443 |
gtattact |
21537436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 122 - 411
Target Start/End: Complemental strand, 21522013 - 21521724
Alignment:
| Q |
122 |
tgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagct |
221 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21522013 |
tgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaagtactaagct |
21521914 |
T |
|
| Q |
222 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagt |
321 |
Q |
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| T |
21521913 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaatagtttgctaactctggaaggtctagagt |
21521814 |
T |
|
| Q |
322 |
ttctggaagctttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagtgaaaaagtag |
411 |
Q |
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| T |
21521813 |
ttctggaagttttacttcacattcacatctataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtag |
21521724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 333
Target Start/End: Original strand, 20426330 - 20426534
Alignment:
| Q |
129 |
taattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttcttaca |
228 |
Q |
| |
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|||| ||||| ||||||||| |||||||||||||| ||| ||||||||||||| ||| |||| ||| || | || ||||||||||| ||||||||| |
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| T |
20426330 |
taatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgattaatttgaaattctcaatgaataaagtactaaacttcttaca |
20426429 |
T |
|
| Q |
229 |
ttttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagtttctgga |
328 |
Q |
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||||||||||||| ||||| || | ||| ||||| | |||| || || ||||| ||||| || ||| || ||||||| ||||||| |||||||||| || |
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| T |
20426430 |
ttttaagaaaggcttagcacaaccattgtcatcatctaaagaaattgaaacatttcttagacgacaacttactaactccggaagatatatagtttctaga |
20426529 |
T |
|
| Q |
329 |
agctt |
333 |
Q |
| |
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||||| |
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| T |
20426530 |
agctt |
20426534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 20427630 - 20427552
Alignment:
| Q |
208 |
taaagtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
286 |
Q |
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||||||| |||||||||||||||| ||||||||| ||||| || | |||| |||| ||||||||| |||||||| |||| |
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| T |
20427630 |
taaagtattaagcttcttacatttcaagaaaggcttagcacaaccattgctatcatccaaagtaattgtaacatttctt |
20427552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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