View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_29 (Length: 426)
Name: NF3069_low_29
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 22123301 - 22123699
Alignment:
| Q |
10 |
gcacagatgttcgagtgttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaaggacgagat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22123301 |
gcacagatgttcgagtgttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaaggacgagat |
22123400 |
T |
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| Q |
110 |
tggaggtatgacatccttacaaacactatgttatgttgatttaaatatgaagggagtagtaaaactaattacagagctaggaaaactgaagcagttaaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22123401 |
tggaggtatgacatccttacaaacactatgttatgttgatttaaatatgaagggagtagtaaaactaattacagagctaggaaaactgaagcagttaaag |
22123500 |
T |
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| Q |
210 |
caattgggtttggttcaagttgggagagaaactgggatggctttattttcctcgttgaatgagttgcaaccattggagaagctaaatattgaatcaaaat |
309 |
Q |
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| T |
22123501 |
caattgggtttggttcaagttgggagagaaactgggatgactttattttcctcgttgaatgagttgcaacaattggagaagctaaatattgaatcaaaat |
22123600 |
T |
|
| Q |
310 |
tgacaagtaatgacgaagtcattggtctgaatttgatttcacccgcaccaatggttcaaaatcttagactacatgcgaggttagagaagttgccagagt |
408 |
Q |
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| T |
22123601 |
tgacaagtaatgacgaagtcattggtttgaatttgatttcacccacaccaatggttcaaaatcttagactacatgcgaggttagagaagttgccagagt |
22123699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 30988382 - 30988256
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaaggacgagattggaggtatgacatcc |
125 |
Q |
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||||||||| ||| |||||||||||| |||||||||||||||||||||| | | | |||||||||| || ||||| | ||||||| ||||||||| |
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| T |
30988382 |
gttgccaaaggagattagcaagcttagaaagctaagacatcttatcggcactggactgtctttgattcagttaaaggatggtattggagagatgacatcc |
30988283 |
T |
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| Q |
126 |
ttacaaacactatgttatgttgattta |
152 |
Q |
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||||||| ||| |||||||| ||||| |
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| T |
30988282 |
ctacaaacgctacgttatgttaattta |
30988256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 21938534 - 21938584
Alignment:
| Q |
24 |
gtgttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
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| T |
21938534 |
gtgttgccaaaagagattagcaagctcagaaagctaagacatcttatcggc |
21938584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 21931810 - 21931858
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
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||||||||| ||| |||| ||||||| |||||||||||||||||||||| |
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| T |
21931810 |
gttgccaaaggagattaggaagcttagaaagctaagacatcttatcggc |
21931858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22029395 - 22029443
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
| |
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||||||||| ||| |||| ||||||| |||||||||||||||||||||| |
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| T |
22029395 |
gttgccaaaggagattaggaagcttagaaagctaagacatcttatcggc |
22029443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22188383 - 22188431
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
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||||||||| ||| |||| ||||||| |||||||||||||||||||||| |
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| T |
22188383 |
gttgccaaaggagattaggaagcttagaaagctaagacatcttatcggc |
22188431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 22116477 - 22116554
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggctgcgaaatatctttgattctattgaagga |
103 |
Q |
| |
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||||||||| ||| |||||||||||| ||||||||| || ||||||||| | | |||||||||||| ||| ||||| |
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| T |
22116477 |
gttgccaaaggagattagcaagcttagaaagctaaggcaccttatcggccaccgactatctttgattcaattaaagga |
22116554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 21947016 - 21947064
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
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||||||||| ||| | |||||||||| |||| ||||||||||||||||| |
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| T |
21947016 |
gttgccaaaggagataagcaagcttataaagttaagacatcttatcggc |
21947064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22035909 - 22035957
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||| || ||||||||| |
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| T |
22035909 |
gttgccaaaggagattagcaagcttagaaagctaaggcaccttatcggc |
22035957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 22180800 - 22180848
Alignment:
| Q |
26 |
gttgccaaacgaggttagcaagcttaaaaagctaagacatcttatcggc |
74 |
Q |
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||||||||| ||| | |||||||||| |||||||| ||||||||||||| |
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| T |
22180800 |
gttgccaaaggagataagcaagcttagaaagctaaaacatcttatcggc |
22180848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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