View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_31 (Length: 416)
Name: NF3069_low_31
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 7414915 - 7415304
Alignment:
| Q |
11 |
caaagggatatactactacactcattactaaatgtaaattccaacaatccaacatcatatacttcttcattatcatgtctacannnnnnncgctcttgta |
110 |
Q |
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| T |
7414915 |
caaagggatatactactacactcattactaaatgtaaattccaacaatccaacatcatatatttcttcattatcatgcctacattttttttgctcttgta |
7415014 |
T |
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| Q |
111 |
attaagtatgatgacattaaactcacacaaatccaattatgttgaattctcaaccttattaaacacaaaacctaagtagagaaaatactcaaagggagta |
210 |
Q |
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| T |
7415015 |
attaagtatgatgacattaaactcacacaaatccaattatgttgaattctcaaccttattaaacacaaaacctaagtagagaaaatactcaaagggagta |
7415114 |
T |
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| Q |
211 |
aagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatattcaaatcctcctttttc |
310 |
Q |
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| T |
7415115 |
aagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatattcaaatcctcctttttc |
7415214 |
T |
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| Q |
311 |
acattattaggtaatgtccaattaaatccatgcaacaaattagccaaacttgtttgaatcaccttaataccaagagggtaaccaggacac |
400 |
Q |
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| T |
7415215 |
acattattaggtaatgtccaattaaatccatgcaacaaattagccaaacttgtttgaatcaccttaataccaagagggtaaccaggacac |
7415304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 203 - 400
Target Start/End: Original strand, 7422766 - 7422963
Alignment:
| Q |
203 |
agggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatattcaaatcct |
302 |
Q |
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| T |
7422766 |
agggagtaaagatgatgaggaagtctaggctccacaacaacttctagtggtattttcctaggagtagtcagcccaaaaatctcctccatattcaaatcct |
7422865 |
T |
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| Q |
303 |
cctttttcacattattaggtaatgtccaattaaatccatgcaacaaattagccaaacttgtttgaatcaccttaataccaagagggtaaccaggacac |
400 |
Q |
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| T |
7422866 |
ctttcttcatatcattaggtaatctccaattaaatccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacac |
7422963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 192 - 400
Target Start/End: Original strand, 7429161 - 7429369
Alignment:
| Q |
192 |
aaaatactcaaagggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccat |
291 |
Q |
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| T |
7429161 |
aaaatacttagaggcaataaagatgatacggaagtttaggctccaaaacaacttctaatggtattttcttaggtgtagtgagcccaaaaatctcctccat |
7429260 |
T |
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| Q |
292 |
attcaaatcctcctttttcacattattaggtaatgtccaattaaatccatgcaacaaattagccaaacttgtttgaatcaccttaataccaagagggtaa |
391 |
Q |
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||| |||||||| ||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||| ||| |
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| T |
7429261 |
atttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaagttagccaaacttgattgaaccaccttaagaccaagaggataa |
7429360 |
T |
|
| Q |
392 |
ccaggacac |
400 |
Q |
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||||||||| |
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| T |
7429361 |
ccaggacac |
7429369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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