View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_34 (Length: 402)
Name: NF3069_low_34
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 72 - 364
Target Start/End: Complemental strand, 27508832 - 27508540
Alignment:
| Q |
72 |
cacacaagtacactctctctagagagatcaaaatttcttaataacagcatatagaacaaaattaattagaataataataacaacttcaaattaattaggg |
171 |
Q |
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| T |
27508832 |
cacacaagtacactctctctagagagatcaaaatttcttaataacagcatatagaacaaaattaattagaataataataacaacttcaaattaattaggg |
27508733 |
T |
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| Q |
172 |
tttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacatttctcttgatacaattctcagcacaaaactgttctatagcagcttcatct |
271 |
Q |
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| T |
27508732 |
tttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacatttctcttgatacaattctcagcacaaaactgttctatagcagcttcatct |
27508633 |
T |
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| Q |
272 |
tgtttctgaattctccaaccatgttcttcagcaaaagccagcaatttctctttctgttcctgagtgaattttgttctgaatctcttccttgat |
364 |
Q |
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| T |
27508632 |
tgtttctgaattctccaaccatgttcttctgcaaaagccagcaatttctctttctgttcctgagtgaattttgttctgaatctcttccttgat |
27508540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27508902 - 27508853
Alignment:
| Q |
1 |
ccctaactagctagctagcttgatcttgtccattaattttccacactaca |
50 |
Q |
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| T |
27508902 |
ccctaactagctagctagcttgatcttgtccattaattttccatactaca |
27508853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 14021393 - 14021447
Alignment:
| Q |
167 |
tagggtttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacat |
221 |
Q |
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| T |
14021393 |
tagggcttcttaccaagagtgtgtttgttgttatgcatccaaaccttaagaacat |
14021447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 166 - 348
Target Start/End: Original strand, 46300648 - 46300830
Alignment:
| Q |
166 |
ttagggtttcttaccaagagtgttcttgttattgtgcatccaaactttaagaacatttctcttgatacaattctcagcacaaaactgttctatagcagct |
265 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||| || ||||| || ||| || |
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| T |
46300648 |
ttagggtttcttaccaagagtgtgcttgttattgtgcatccaaaccttaagcacatgtctcttgataaaattctcagcacagaattgttcaattgcacct |
46300747 |
T |
|
| Q |
266 |
tcatcttgtttctgaattctccaaccatgttcttcagcaaaagccagcaatttctctttctgttcctgagtgaattttgttct |
348 |
Q |
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| T |
46300748 |
tcatcttccttctgaattctccacccaattttctccgcaaatgcaagcatcttatccttttgttcctgcgtgaattttgttct |
46300830 |
T |
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