View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_low_35 (Length: 395)
Name: NF3069_low_35
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 26355044 - 26354668
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26355044 |
ggatggatgttttcatggataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
26354945 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354944 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
26354845 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354844 |
tttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaattt |
26354745 |
T |
|
| Q |
301 |
gggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttagatgg |
377 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354744 |
gggtgtgggagaggttcaaaaaattacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttagatgg |
26354668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 9815038 - 9815407
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| ||||||| || |||||||||||| |||| || ||||| ||||||| | | ||||| ||||| |||||||| || |||| ||||| |
|
|
| T |
9815038 |
ggatggattttttcatcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatct---ttggt |
9815134 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| || |
|
|
| T |
9815135 |
gaaaagttctttgttttctattgctattcatcttgctagaggaaattctattgctttggcaccagctgttttagctagtatttataacgatttaagtttg |
9815234 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaattt |
300 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9815235 |
tttaagaaaacaatagttaatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcacccttttacttggttcaaattt |
9815334 |
T |
|
| Q |
301 |
gggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||||||||||||||| |||| ||||| || |||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
9815335 |
gggtgtgggagaggttccaaaatttacagccagaacccatgttgatcaatcacggagaccctttattgtttag |
9815407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 20036720 - 20036348
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttgg |
99 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| | ||||||| ||| |||||||||||||| | |||| || |||| |
|
|
| T |
20036720 |
ggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactat-ttgg |
20036622 |
T |
|
| Q |
100 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||| | |
|
|
| T |
20036621 |
tgaaaagttctttgtttcctattgctgtatatcttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaacttt |
20036522 |
T |
|
| Q |
200 |
gtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatt |
299 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
20036521 |
gtttaagaaaacaattgttgatttgtcaaaatgtcatgttggtggtgatagacttcctttagaagttactcttgaatcacccttttacttggttcaaatt |
20036422 |
T |
|
| Q |
300 |
tgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||| | |||| ||| |||||||| |||||||| |
|
|
| T |
20036421 |
tgggtgtgggagaggttcaaaaatttacaaccacaacccatgttgttgaaccatggggacccttttttgtttag |
20036348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 26647015 - 26647374
Alignment:
| Q |
11 |
tttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttct |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| || | ||||||| ||| ||| |||||||||| | | || ||||||||||||| | |
|
|
| T |
26647015 |
tttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctc--atctaaat-ttggtgaaaagttgt |
26647111 |
T |
|
| Q |
111 |
ttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaa |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26647112 |
ttgtttcctattgctgttcatcttgctagagggaatccaattgctttggcaccggctgttttagctagcttatataaggatttaagtttgtttaagaaaa |
26647211 |
T |
|
| Q |
211 |
ccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtggga |
310 |
Q |
| |
|
| ||||||||||| |||| | |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26647212 |
cacttgttgatttgaaaaaaatttctgatggtggtgatagatatcctttggaagttactcttcaatcacccttttacttggttcaaatttgggtgtggga |
26647311 |
T |
|
| Q |
311 |
gaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
26647312 |
aaggttcaaaaatttacaaccacaacccaatttgatcaaccaaggagaccctttgttgtttag |
26647374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 20016301 - 20015946
Alignment:
| Q |
18 |
gataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttc |
117 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| | ||||| | |||||||||||||| ||| |||| | | |||||||||| |||||||| |
|
|
| T |
20016301 |
gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc |
20016202 |
T |
|
| Q |
118 |
ctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgt |
217 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
20016201 |
cgattgctattcatcttgctagacgaaatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgt |
20016102 |
T |
|
| Q |
218 |
tgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggtt |
316 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
20016101 |
tgatttgtcaaaat-atcatgtgggtggtgataggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtgggagaggtt |
20016003 |
T |
|
| Q |
317 |
caaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
20016002 |
caaaattttacaaccacaacccatgttgatcaatcatgaagaccctttattgtttag |
20015946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 19951125 - 19951494
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||||| ||||| ||| ||||| ||||||| ||| ||||||||||||||| | ||| || |||| |
|
|
| T |
19951125 |
ggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttccta-ataataaat--tggt |
19951221 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|| |||| || | | |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| || |
|
|
| T |
19951222 |
gaggagttattcgctacctattgctattcatcttgctagaggaaatcctattgctttggctccagctgttttagctagcatatataaggatttaactttg |
19951321 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatt |
299 |
Q |
| |
|
||||| ||| | ||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
19951322 |
tttaaaaaagcaattgttgatttgtcaaaat-atcatgtgggtggtgatagatatcctttagaacttactcttcaatcacccttttacttggttcaaatt |
19951420 |
T |
|
| Q |
300 |
tgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||| | ||||||||||| ||||| |||||||| ||||||||| ||| |||| |||||||||||| |||||||| |
|
|
| T |
19951421 |
tggatttgggagaggtttaaaaatttacaaccacaacccatgccgataaaccatggagacccttttttgtttag |
19951494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 19956085 - 19956457
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||| ||||| || ||| | ||||||| |||||||||||||| ||| |||| | || |
|
|
| T |
19956085 |
ggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaatattcttccgt |
19956184 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
19956185 |
gaaaagttatttgtttcctattgttgttcatcttgctagaggaaatcctattgctttggcaccagctgttttagctagcatatataaggatttaactttg |
19956284 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaattt |
300 |
Q |
| |
|
|| ||||||| | |||||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19956285 |
ttaaagaaaaaaacagttgatttgtcaaaatatcctgtgggtggtgatagatatccttcagaacttactcttcaatcacccttttacttggttcaaattt |
19956384 |
T |
|
| Q |
301 |
gggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || |||||||||||| | |||| | | ||||||| |||||||| |
|
|
| T |
19956385 |
gggtgtgggaaaggttcaaaaatttacagccacaacccatgttgttgaaccataggaacccttttttgtttag |
19956457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 19838394 - 19838766
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttg-g |
99 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||| ||||||| ||||| || | | | ||||||| ||||||||||||||||||| || | | ||| | |
|
|
| T |
19838394 |
ggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcctaatcaacac-tcttgcg |
19838492 |
T |
|
| Q |
100 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
199 |
Q |
| |
|
||||||| | ||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
19838493 |
tgaaaagctttttgtttccaattgttgttcatcttgctagaggaaattctattgctttggcaccagctgttttagctagcatatataatgatttaacttt |
19838592 |
T |
|
| Q |
200 |
gtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatt |
299 |
Q |
| |
|
||| ||||||| | ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19838593 |
gttaaagaaaaaaacagttgatttgtcaaaacatcctgttggttgtgatacatatcctttagaagttactcttcaatcacccttttacttggttcaaatt |
19838692 |
T |
|
| Q |
300 |
tgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||| | |||| || |||||||| |||||||| |
|
|
| T |
19838693 |
tgggtgtgggagaggttcaaaaatttacaaccacaaccaatgttgttgaaccagggggacccttttttgtttag |
19838766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 370
Target Start/End: Original strand, 26653155 - 26653519
Alignment:
| Q |
3 |
atggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtga |
102 |
Q |
| |
|
|||||| ||||||| || ||||||||||| ||||||| || |||||| ||| |||||||| |||||||||||||||||| | | | || | |||| |
|
|
| T |
26653155 |
atggatattttcattgactaaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcatata-gaat--tagtga |
26653251 |
T |
|
| Q |
103 |
aaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtt |
202 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| || | |||| |
|
|
| T |
26653252 |
aaagttctttgttttctattgctgttcatcttgctagaggaaatcctattgctttggcaccagctgttttagctagtatatataaggacttgactttgtt |
26653351 |
T |
|
| Q |
203 |
taagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgg |
302 |
Q |
| |
|
||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||| ||||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
26653352 |
taagaaaacaattgttggtttgtcaaaatattatgttggtggtgatagatttcctttggaagttaatctacgatcacccttttacttggttcaaatttgg |
26653451 |
T |
|
| Q |
303 |
gtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtt |
370 |
Q |
| |
|
|||||||||||||||| ||| || ||||| ||||||| ||||||||| ||| ||||| || |||||| |
|
|
| T |
26653452 |
gtgtgggagaggttcacaaatttgcaaccacaacccaagttgatcaatagtgaagaccattcattgtt |
26653519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 19812300 - 19812656
Alignment:
| Q |
20 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
119 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||| | ||||||| |||||||||||||||||| |||| || |||||||||| ||||||||||| |
|
|
| T |
19812300 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaat--at-ttggtgaaaaagtctttgtttccg |
19812396 |
T |
|
| Q |
120 |
attgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttg |
219 |
Q |
| |
|
|| ||||||| |||||||||||| || |||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
19812397 |
atcgctattcttcttgctagagggtatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgttg |
19812496 |
T |
|
| Q |
220 |
atttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaa |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| || || |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19812497 |
atttgtcaaaatatcctgttggtggtgatagatttcccttggagattactcttcaatcacccttttacttggttcaaatttgggtttgggagaggttcaa |
19812596 |
T |
|
| Q |
320 |
aaacttacaaccgcaac------ccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||| || ||||| |||| | ||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
19812597 |
aaatttgcaaccacaacaacaaactatgttgatcaaccatggcgacccttttttgtttag |
19812656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 19848991 - 19849373
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttgg |
99 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| | ||||||| ||| |||||||||||||| | |||| || |||| |
|
|
| T |
19848991 |
ggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactat-ttgg |
19849089 |
T |
|
| Q |
100 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||| | |
|
|
| T |
19849090 |
tgaaaagttctttgtttcctattgctgtatatcttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaacttt |
19849189 |
T |
|
| Q |
200 |
gtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatt |
299 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||||||||| ||| || || |||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
19849190 |
gtttaagaaaacaatcactgatttgtcaaaatgtcatgttggtggtgatagatttcccttggagattactcttaaatcacccttttatttggttcaaatt |
19849289 |
T |
|
| Q |
300 |
tgggtgtgggagaggttcaaaaactt------acaaccgcaacccatgttgatcaaccgtggagaccctttattgtttagatgg |
377 |
Q |
| |
|
||||||||||||||||||||||| || ||| || ||| ||||||||| ||||| ||| || |||||||||||||||||| |
|
|
| T |
19849290 |
tgggtgtgggagaggttcaaaaatttgcaaccacagccacaaaccatgttgaccaaccatggggatcctttattgtttagatgg |
19849373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 19818577 - 19818933
Alignment:
| Q |
20 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
119 |
Q |
| |
|
|||||||| ||| ||||||| ||||| || ||| | |||||||||||||||||||||||||| || | || |||||||||| || | |||||||| |
|
|
| T |
19818577 |
taaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataa--gaat-ttggtgaaaaattatctgtttcct |
19818673 |
T |
|
| Q |
120 |
attgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttg |
219 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||| |||||||||||| || |||| |
|
|
| T |
19818674 |
gttgctgttaatcttgctagagggaatcctattgctttggcaccggctgttttggctaacatttataaagatttaagtttgtttaagaaaaaaatagttg |
19818773 |
T |
|
| Q |
220 |
atttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaa |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
19818774 |
atttgtcaaaatattctgttggtggtgatagatttcctttagaacttactcttcaatcacccttttatttggttcaaatatgggtgtgggagaggttcaa |
19818873 |
T |
|
| Q |
320 |
aaacttacaa------ccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||| | ||| || ||| |||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
19818874 |
aaatatgcaaccactgccacaaaccatgttgataaaccatggagacccttttttgtttag |
19818933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 20046124 - 20046493
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttgg |
99 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||| ||||||||||||| ||| || | ||||||| |||||||||||||||||| | |||| || | || |
|
|
| T |
20046124 |
ggatggatatgttcatcgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaa---atat-gg |
20046219 |
T |
|
| Q |
100 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
199 |
Q |
| |
|
|||||| || ||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||| | ||||||||||||||||||||| | |
|
|
| T |
20046220 |
tgaaaaattgtttgttttctattgctattaatcttgctagaggaaatccaattgctttggcacctgctgttttgggtagcatatataaggatttaagttt |
20046319 |
T |
|
| Q |
200 |
gtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatt |
299 |
Q |
| |
|
|||||||| || ||| ||||| ||| ||||| | |||||||||||||||| |||| | ||| ||||| ||| |||||| ||||| ||||||||| || |
|
|
| T |
20046320 |
atttaagaacacaattattgatctgttaaaatatccggttggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtt |
20046419 |
T |
|
| Q |
300 |
tgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||| ||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
20046420 |
tgggtgtgggagaggttcgcaaaattaccaccacaacccatgttgatcaatcccagcgaccctttattgtttag |
20046493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 19989523 - 19989895
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcct-agaaaatgcatgttgg |
99 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||||| |||||||| ||| | ||||||| |||||||||||| |||| | |||| | ||||| |
|
|
| T |
19989523 |
ggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgttcatccttataaaagtcgtgttg- |
19989621 |
T |
|
| Q |
100 |
tgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgt |
199 |
Q |
| |
|
|||| |||||||| |||| | |||||||||||||||||||||||||| ||||||| || ||||| || ||||| ||||| | |||||||||||| | | |
|
|
| T |
19989622 |
tgaatagttctttctttcgtgttgctattcatcttgctagaggaaatcctattgcattagcacctgcagttttggctagtttgtataaggatttaggttt |
19989721 |
T |
|
| Q |
200 |
gtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatt |
299 |
Q |
| |
|
||||||| | | ||| ||||||||||| | ||||||||||||||||| ||| | || | || |||||||||||| ||||||||||||||| || |
|
|
| T |
19989722 |
acttaagaacatattagttaatttgtcaaaacttcctgttggtggtgatagacttcccatggaggctattcttcaatcacccttttacttggttcaagtt |
19989821 |
T |
|
| Q |
300 |
tgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||| |||||||| || ||||||||| |||||||| |
|
|
| T |
19989822 |
tgggtttgggagaggttcaaaaatttacaaccacaacccatgctgatcaactatgaagacccttttttgtttag |
19989895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 17114912 - 17115086
Alignment:
| Q |
199 |
tgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaat |
298 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||| ||||||||||| ||||||||||||| ||| || | || ||||||||||||||||| |
|
|
| T |
17114912 |
tgtttaagaaaactattattgatttgtcaaaaaatcctgtttatggtgatagatttcctttagaagttgctcgtcgaatgcccttttacttggttcaaat |
17115011 |
T |
|
| Q |
299 |
ttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17115012 |
ttggatgtgggagaggttcaaaaatttacaaccacaatccatgttgatcaaccatggagaccctttattgtttag |
17115086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 30914653 - 30915016
Alignment:
| Q |
10 |
ttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttc |
109 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||| ||||||||| || | ||||||| |||||||||||||| ||| ||| || ||||||||||||| |
|
|
| T |
30914653 |
ttttcattgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaag--at-ttggtgaaaagttt |
30914749 |
T |
|
| Q |
110 |
tttgtttcctattgc---tattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaag |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || | |||| || ||||| || ||||||||||| || |||||||| |||||||| |
|
|
| T |
30914750 |
tttgtttcctattgcgcctattcatcttgctagagggaacattgttgcattagcaccaaaaaaattggctagcatatacaaagatttaagtttgtttaag |
30914849 |
T |
|
| Q |
207 |
aaaaccattgttgatttgtcaaaattatct-gttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtg |
305 |
Q |
| |
|
||||| || |||| ||||||||||| ||| |||||||||||||||| |||| | || ||||||||||| ||||| ||| ||||||| ||||||||||| |
|
|
| T |
30914850 |
aaaacaatagttggtttgtcaaaat-atcaagttggtggtgatagatgtcctatggaggttactcttcactcaccctttgacttggtacaaatttgggtt |
30914948 |
T |
|
| Q |
306 |
tgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||||||||| ||||| || |||||||| | ||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
30914949 |
tgggagaggttaaaaaatttgcaaccgcatactatgtttatcaaccagggagacccttcattgtttag |
30915016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24840091 - 24839869
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| || |||||||| ||| | ||||||| |||||||||||||| ||| |||| | | || |
|
|
| T |
24840091 |
ggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaatactctctagt |
24839992 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||| |||||||| ||| ||||| |||||||||| |||||||| |||||| ||||||| |||||||| || |
|
|
| T |
24839991 |
gaaatgttctttgtttcctgttgctgttcatctagctagagggaatcctatttctttggcacctgctgttttggctagcttatataacgatttaaggttg |
24839892 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgattt |
223 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
24839891 |
tttaagaacacaattgttgattt |
24839869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19858073 - 19858281
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| |||| || |||||||| ||| | ||||||| ||||||||||||||||||| | || | | || |
|
|
| T |
19858073 |
ggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagatactttaatgt |
19858172 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||||| ||||| || || |
|
|
| T |
19858173 |
gaaaagatctttgtttcctattgctattggtcttgctagaggaaatactatcgctttggcacctgctgttttggctagcttatataacgatttgagtttg |
19858272 |
T |
|
| Q |
201 |
tttaagaaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
19858273 |
tttaagaaa |
19858281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 19853532 - 19853735
Alignment:
| Q |
20 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
119 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||| | ||||||| || ||||||||||||||| | || | | | |||||||| |||||||||||| |
|
|
| T |
19853532 |
taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcct |
19853631 |
T |
|
| Q |
120 |
attgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttg |
219 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||||| |||||||| |||||| ||||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
19853632 |
attgctattcgtcttgctagaggtaatactattgctttggcacctgctgttttggctagcttatataacgatttgagtttgtttaagaaaaaaattgttg |
19853731 |
T |
|
| Q |
220 |
attt |
223 |
Q |
| |
|
|||| |
|
|
| T |
19853732 |
attt |
19853735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19943721 - 19943940
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| | ||||||| ||||||| ||||||||| | || || |||| |
|
|
| T |
19943721 |
ggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaattt--gtttttcctcatagatacaatgtggt |
19943818 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||| | | |||| ||||||||||| |||||||| |||||| ||||||||||||| || || |
|
|
| T |
19943819 |
gaaaagttct--gtttcctattgctgttcatcttgctagagggattcctatggctttggcacctgctgttttggctagcttatataaggatttgagtttg |
19943916 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgatttg |
224 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
19943917 |
tttaagaaacaaattgttgatttg |
19943940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 19832123 - 19832213
Alignment:
| Q |
254 |
tcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttg |
344 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
19832123 |
tcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttacatccacaacccatgttg |
19832213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 19971710 - 19971835
Alignment:
| Q |
99 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | |||||| ||| |||||||||||||||| ||||||| |||||| |||||||||||| || |
|
|
| T |
19971710 |
gtgaaaagttctttgtttcctattgctattcatttggttagaggcaatactattgctttggcaccaactgttttggctagcttatataaggattgaactc |
19971809 |
T |
|
| Q |
199 |
tgtttaagaaaaccattgttgatttg |
224 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
19971810 |
tgtttaagaaacaaattgttgatttg |
19971835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 19858343 - 19858442
Alignment:
| Q |
274 |
aatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||||| ||||||||||| ||| | || ||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
19858343 |
aatcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaatttagagccacaacccatgttgatcaagcatggagaacctttattgtttag |
19858442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 19853755 - 19853861
Alignment:
| Q |
264 |
gttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctt |
363 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||| ||||||||||||||| |||| ||| || || || ||||| | |||||||||| |||||||| | |
|
|
| T |
19853755 |
gttaatctgcaatcacccttttacttggtacaagcttgggtgtgggagagattcataaatttgcagccacaaccgaagttgatcaacaatggagaccatg |
19853854 |
T |
|
| Q |
364 |
tattgtt |
370 |
Q |
| |
|
||||||| |
|
|
| T |
19853855 |
tattgtt |
19853861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 19943987 - 19944084
Alignment:
| Q |
273 |
caatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagaccctttattgtt |
370 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||| ||||| ||||||||||| || || || ||||| | ||||||||| |||||||| | ||||||| |
|
|
| T |
19943987 |
caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaatttgcagccacaaccaaagttgatcaataatggagaccatgtattgtt |
19944084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 344
Target Start/End: Complemental strand, 24839822 - 24839751
Alignment:
| Q |
273 |
caatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttg |
344 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||| ||||| ||||||||||| || || || ||||||| |||| |
|
|
| T |
24839822 |
caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaaatttgcagccacaacccaagttg |
24839751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 1717215 - 1717532
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||||| |||||||| ||| | ||||||| || ||| |||||||||| ||| || | |||| |
|
|
| T |
1717215 |
ggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa-gctt--tggt |
1717311 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1717312 |
gaaaaaatctttgtttcctattgctgttcatcttgctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttg |
1717411 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaattt |
300 |
Q |
| |
|
||||||||||| || |||| ||||||||||| |||||||||| ||||||| | || || |||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
1717412 |
tttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttacttggttcaaattt |
1717511 |
T |
|
| Q |
301 |
gggtgtgggagaggttcaaaa |
321 |
Q |
| |
|
|||||| || |||||||||| |
|
|
| T |
1717512 |
gggtgttgggaaggttcaaaa |
1717532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22689772 - 22689550
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||| ||||||| |||||||| ||| | ||||||| |||||||||||||||||| ||| |||| ||| |
|
|
| T |
22689772 |
ggatggatgttttcatcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaaaatatgtcggt |
22689673 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtg |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| |||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||| || || |
|
|
| T |
22689672 |
caaaagttctttgtttactatttctattcatctggctagaggcaatactattgctttggcacctgctgttttggctagcatatataaggatttgagtttg |
22689573 |
T |
|
| Q |
201 |
tttaagaaaaccattgttgattt |
223 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
22689572 |
tttaagaaacaaattgttgattt |
22689550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 22651912 - 22651781
Alignment:
| Q |
99 |
gtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
198 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
22651912 |
gtgaaaagttgtttgtttcctattgctgttcatcttgctagaggaaatcctattgcttttgcaccagctgttttggctagcatgtataaggatttaactt |
22651813 |
T |
|
| Q |
199 |
tgtttaagaaaaccattgttgatttgtcaaaa |
230 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
22651812 |
tgtttaagaaaacaattgttgatttgtcaaaa |
22651781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 11564251 - 11564059
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
||||||| |||||||| ||||| |||| || ||||||| |||||||||||| ||| ||| | || ||||||||||||||| ||| || ||||| | |
|
|
| T |
11564251 |
ggatggaatttttcatgagtaaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaaagcttgttgat |
11564152 |
T |
|
| Q |
101 |
gaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggattt |
193 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| | ||| | ||| || ||||||||||||| |
|
|
| T |
11564151 |
caaaagttctttgtttcctattgctgttcatcttgctagaggaaaacctattgctttagcaccgtcggttctggcttgcttatataaggattt |
11564059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 22685778 - 22685642
Alignment:
| Q |
20 |
taaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcct |
119 |
Q |
| |
|
||||||||||||| |||| || |||||||| ||| ||||||||| ||| |||||||||||||| ||| || |||||||||| |||| ||||||| |
|
|
| T |
22685778 |
taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaa---attttggtgaaaacttctatgtttccg |
22685682 |
T |
|
| Q |
120 |
attgctattcatcttgctagaggaaattctattgctttgg |
159 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
22685681 |
attgctattcatcttgctagagggaatcctattgctttgg |
22685642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 22689530 - 22689445
Alignment:
| Q |
264 |
gttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaa |
349 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||| | |||||||||||||| |
|
|
| T |
22689530 |
gttaatctgcaatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaaatttgcaaccacggcccatgttgatcaa |
22689445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 360
Target Start/End: Original strand, 11544343 - 11544430
Alignment:
| Q |
273 |
caatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaaccgtggagacc |
360 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||||| || ||||| |||||| |||||||||| |||||||| |
|
|
| T |
11544343 |
caatcacccatttacttggttcaagtttgggtttgggagaggttcaaaaatttgcaaccaaaacccaagttgatcaacaatggagacc |
11544430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 22652205 - 22652126
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgttttt |
80 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||| ||||| ||| ||| | ||||||| ||||||||||||||| |
|
|
| T |
22652205 |
ggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgttttt |
22652126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 22685641 - 22685596
Alignment:
| Q |
185 |
taaggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaa |
230 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
22685641 |
taaggatttaagtttttttaagaaaacaattgttgatttgtcaaaa |
22685596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 6398280 - 6398611
Alignment:
| Q |
19 |
ataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcc |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||| ||| | |||||| | |||||||||||||||||| ||| ||| |||||||||| ||||||| | |
|
|
| T |
6398280 |
ataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttttcctagtaaaacaatg---gtgaaaagttgtttgttttc |
6398376 |
T |
|
| Q |
119 |
tattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagc--atatataaggatttaagcgtgtttaag-aaaaccatt |
215 |
Q |
| |
|
||||||| || |||| |||||||||||| | || | ||||||||| ||||||||||||||| |||||||||||||||| | |||||| |||| ||| |
|
|
| T |
6398377 |
tattgctgttaatctcgctagaggaaatccaatcggtttggcaccagctgttttagctagcatatatataaggatttaactttatttaagaaaaaaaatt |
6398476 |
T |
|
| Q |
216 |
gttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagagg |
314 |
Q |
| |
|
||||| |||||||| |||| ||||| || |||||||| |||| | ||| ||||||| ||||| |||||| |||||||| ||| ||||||||||||| |
|
|
| T |
6398477 |
attgatatgtcaaaa-tatcatgttgatgatgatagatttcctgttgaatttactctgttgtcacctttttacgtggttcaagtttaggtgtgggagagg |
6398575 |
T |
|
| Q |
315 |
ttcaaaaacttacaaccgcaacccatgttgatcaac |
350 |
Q |
| |
|
|||| |||||| ||||| |||| ||||||||||||| |
|
|
| T |
6398576 |
ttcacaaacttgcaaccacaactcatgttgatcaac |
6398611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 6397855 - 6397539
Alignment:
| Q |
1 |
ggatggatgttttcatggataaaggtagtgaagttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggt |
100 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||| ||||||| ||||| ||| ||| | | ||||| ||||||| || ||||||| ||| ||| || |
|
|
| T |
6397855 |
ggatggatatgttcatcgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaaaaaatg---gt |
6397759 |
T |
|
| Q |
101 |
gaaaagttct--ttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcg |
198 |
Q |
| |
|
|||||||| | ||| || ||||| | || |||||||||||| |||| | |||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
6397758 |
gaaaagttttgtttgctttctattaatgttaatcttgctagagaaaatccaattgctttggcaccatctgttttggctatcatatataaggatttatctt |
6397659 |
T |
|
| Q |
199 |
tgtttaagaaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaa |
297 |
Q |
| |
|
| ||||||||||| ||| |||||||||| ||| |||| |||||||| ||||| || || | | ||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
6397658 |
tatttaagaaaacaattattgatttgtcgaaa-tatcttgttggtgatgataaatttcatgttgaatttactcttctatcacctttttacttggttcaag |
6397560 |
T |
|
| Q |
298 |
tttgggtgtgggagaggttca |
318 |
Q |
| |
|
|||||| |||| ||||||||| |
|
|
| T |
6397559 |
tttgggcgtggaagaggttca |
6397539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 351
Target Start/End: Original strand, 12497303 - 12497556
Alignment:
| Q |
97 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaag |
196 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||| ||||||||||| ||||| ||| ||||| | || |||||||| ||||||||| |||| ||||||| |
|
|
| T |
12497303 |
tggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaattactttgccgccagctgttttggctagcataaataacgatttaac |
12497402 |
T |
|
| Q |
197 |
cgtgtttaagaaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttca |
295 |
Q |
| |
|
| ||||||||||| ||| ||||| |||||||| ||| | |||||| | ||| || | || | ||| ||||| ||| ||||| |||||||||||||| |
|
|
| T |
12497403 |
tttatttaagaaaacaattattgatctgtcaaaa-catcttattggtgataatatattttctgttgaatttacttttctctcacctttttacttggttca |
12497501 |
T |
|
| Q |
296 |
aatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaacc |
351 |
Q |
| |
|
||||||| ||||||||| || |||||| ||||| |||| |||||||||||||| |
|
|
| T |
12497502 |
tgtttgggt-tgggagaggctcgcaaacttgcaaccacaactcatgttgatcaacc |
12497556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 351
Target Start/End: Original strand, 12521168 - 12521421
Alignment:
| Q |
97 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaag |
196 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||| ||||||||||| ||||| ||| ||||| | || |||||||| ||||||||| |||| ||||||| |
|
|
| T |
12521168 |
tggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaattactttgccgccagctgttttggctagcataaataacgatttaac |
12521267 |
T |
|
| Q |
197 |
cgtgtttaagaaaaccattgttgatttgtcaaaattatc-tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttca |
295 |
Q |
| |
|
| ||||||||||| ||| ||||| |||||||| ||| | |||||| | ||| || | || | ||| ||||| ||| ||||| |||||||||||||| |
|
|
| T |
12521268 |
tttatttaagaaaacaattattgatctgtcaaaa-catcttattggtgataatatattttctgttgaatttacttttctctcacctttttacttggttca |
12521366 |
T |
|
| Q |
296 |
aatttgggtgtgggagaggttcaaaaacttacaaccgcaacccatgttgatcaacc |
351 |
Q |
| |
|
||||||| ||||||||| || |||||| ||||| |||| |||||||||||||| |
|
|
| T |
12521367 |
tgtttgggt-tgggagaggctcgcaaacttgcaaccacaactcatgttgatcaacc |
12521421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 12581426 - 12581620
Alignment:
| Q |
34 |
ttgaacacgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcctattgctattcatct |
133 |
Q |
| |
|
||||||| ||||| ||| ||| | ||||||| |||||||||||||||||| | | | ||| |||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
12581426 |
ttgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcgtagaaaaatg---gtgaaaagttatttgttttctattgctattaatct |
12581522 |
T |
|
| Q |
134 |
tgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaat |
231 |
Q |
| |
|
||||||| ||||| ||| ||||| | | ||||||| ||||||||| |||||||||||| | ||||||||||| ||| ||||| ||||||||| |
|
|
| T |
12581523 |
tgctagaagaaatcgaattactttgccgcaaactgttttggctagcataaataaggatttaactttatttaagaaaacaattattgatctgtcaaaat |
12581620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 12579972 - 12579836
Alignment:
| Q |
236 |
tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaacttacaaccgcaa |
335 |
Q |
| |
|
|||||||| ||||| ||||||| | || ||||||||| |||||| |||||||||| | || ||||| | |||||||||||| ||||| ||||| | | |
|
|
| T |
12579972 |
tgttggtgatgatatatatcctgtttaatttactcttccatcacctttttacttggcttaagtttggatacgggagaggttcacaaactatcaaccac-a |
12579874 |
T |
|
| Q |
336 |
cccatgttgatcaaccgtggagaccctttattgtttag |
373 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
12579873 |
cccatattgatcaaccgcatagaccctttattgcttag |
12579836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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