View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_39 (Length: 381)
Name: NF3069_low_39
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_39 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 27944427 - 27944791
Alignment:
| Q |
18 |
tatataaa-actcactcagcacccaacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27944427 |
tatataaagactcactcagcacccaacttaacatatcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgttctctg |
27944526 |
T |
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| Q |
117 |
tccttttcctcttattctctgtggacttggcattctcgacgccgaacgacggagaagatccaataatccagcaggtggtcgataagggaggagcttagtt |
216 |
Q |
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| T |
27944527 |
tccttttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagctgagta |
27944626 |
T |
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| Q |
217 |
tcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27944627 |
tcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgct |
27944726 |
T |
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| Q |
317 |
aaaagacatgggataatggatcattcagcaactcatggtgttacaagattctccgatcttactcc |
381 |
Q |
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| T |
27944727 |
aagagacatgggataatggatccttcagcaactcatggtgttacaagattctccgatcttactcc |
27944791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 27550307 - 27549937
Alignment:
| Q |
18 |
tatataaaactcactcagcacccaacttaacatatcataa-------cataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgt |
110 |
Q |
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| T |
27550307 |
tatataaaactcactcagcactcaacttaacatatcataagtcataacataccatactacgatcaagccatgatgaatcgtaacaagactctcatgctgt |
27550208 |
T |
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| Q |
111 |
tctctgtccttttcctcttattctctgtggacttggcattctcgacgccgaacgacggagaagatccaataatccagcaggtggtcgataagggaggagc |
210 |
Q |
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| T |
27550207 |
tctctgtccttttcctgttcttttctgtcgacttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagc |
27550108 |
T |
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| Q |
211 |
ttagtttcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcac |
310 |
Q |
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| T |
27550107 |
tgagcatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcac |
27550008 |
T |
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| Q |
311 |
cgtgctaaaagacatgggataatggatcattcagcaactcatggtgttacaagattctccgatcttactcc |
381 |
Q |
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| T |
27550007 |
cgtgctaagagacatgtgataatggatccttcggcaactcatggtgttacaagattctccgatcttactcc |
27549937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 87 - 381
Target Start/End: Original strand, 27436005 - 27436299
Alignment:
| Q |
87 |
atcgtaacaagactctcatgctgttctctgtccttttcctcttattctctgtggacttggcattctcgacgccgaacgacggagaagatccaataatcca |
186 |
Q |
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| T |
27436005 |
atcgtaaccaaactttcatgctgttctctgtccttttcctgttcttctctgtcgacttggcattctcgatgccgaaggatagagaagatccaataatcca |
27436104 |
T |
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| Q |
187 |
gcaggtggtcgataagggaggagcttagtttcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttc |
286 |
Q |
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| T |
27436105 |
gcaggtggtcgataagggaggagctgagtatcaatttaatgaattcaagcaaaggtttggtaaggtttattcctccaaagatgaacatgattataggttc |
27436204 |
T |
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| Q |
287 |
aacgtcttcaagtctaaccttcaccgtgctaaaagacatgggataatggatcattcagcaactcatggtgttacaagattctccgatcttactcc |
381 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27436205 |
aacgtcttcaagtctaaccttcaccgtgctaagagacatgggataatggatccttcagcaactcatggtgttacaagattctccgatcttactcc |
27436299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 378
Target Start/End: Original strand, 26764904 - 26765041
Alignment:
| Q |
241 |
gtttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgctaaaagacatgggataatggatcat |
340 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||| || |||||||||| || ||| | ||||||| | |
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| T |
26764904 |
gtttgggaaggtttattcttccaaggatgaacatgattacaggtttaaaatcttcaagtctaatctgaaccgtgctaagaggcatcaattgatggatcct |
26765003 |
T |
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| Q |
341 |
tcagcaactcatggtgttacaagattctccgatcttac |
378 |
Q |
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|| || ||| |||||||||||||||||||||||||| |
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| T |
26765004 |
tcggcggttcacggtgttacaagattctccgatcttac |
26765041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 27435916 - 27435969
Alignment:
| Q |
18 |
tatataaa-actcactcagcacccaacttaacatatcataacataccatactac |
70 |
Q |
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| T |
27435916 |
tatataaagactcactcagcacccaacttaacatatcataacataccatactac |
27435969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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