View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_40 (Length: 378)
Name: NF3069_low_40
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 4773936 - 4773792
Alignment:
| Q |
13 |
aacacgggcctaaacagacttaatggatcactataccaaaagacctttgcattattgcatataaaactaaaacctacttcatctaaattatctggcgtat |
112 |
Q |
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| T |
4773936 |
aacacgggcctaaacagacttaatggatcactataccaaaagacctttgcattattgcatataaaactaaaacctacttcatctaaatcatctggcgtat |
4773837 |
T |
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| Q |
113 |
acttaagtacttaacctagaagagcgtaaacttcaacacatccct |
157 |
Q |
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| T |
4773836 |
acttaagtacttaacccagaagagcgtcaacttcaacacatccct |
4773792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 4773753 - 4773688
Alignment:
| Q |
159 |
aagtcttgcacctgaaaacaaagtataaattatattattaacacaagcatgttataacttgatcat |
224 |
Q |
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| T |
4773753 |
aagtcttgcacctgaaaacaaagtataaattatattattaacacaggcatgttataacttgatcat |
4773688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8812685 - 8812774
Alignment:
| Q |
1 |
caacaaaacttaaacacgggcctaaacagacttaatggatcactataccaaaagacctttgcattattgcatataaaactaaaacctact |
90 |
Q |
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| T |
8812685 |
caacaaaactgaagcacaggcctgaacaaacttaatgaatcgctgtcccaaaagacctttgcattattgcatctaaaactaaaacctact |
8812774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 4773680 - 4773625
Alignment:
| Q |
295 |
aaacatcgaagagagagattgcagcgagaaaaagaggacaacgacatagaacttcc |
350 |
Q |
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| T |
4773680 |
aaacatcgaagagagatattgcagcgacaaaaagaggacaaagacatagaacttcc |
4773625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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