View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_42 (Length: 371)
Name: NF3069_low_42
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_42 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 14180598 - 14180257
Alignment:
| Q |
20 |
tcttacccagttggataaattcatgttttcatcttgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtctattaatgatcaat |
119 |
Q |
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| T |
14180598 |
tcttacccagttggataaattcatgttttcatcttgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtctattaatgatcaat |
14180499 |
T |
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| Q |
120 |
gatataggtgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctca |
219 |
Q |
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| T |
14180498 |
gatataggtgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctca |
14180399 |
T |
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| Q |
220 |
ttctgtattaaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaattaaaagagataggagtaatattgattaaaattaacaagaagtact |
319 |
Q |
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| T |
14180398 |
ttctgtattgaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaattaaaagagataggaataatattgattaaaattaacaagaagtact |
14180299 |
T |
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| Q |
320 |
ctgatctaattacatagaaaattaatacacccaatccctatg |
361 |
Q |
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| T |
14180298 |
ctgatctaattacatagaaaattaatacacccaatccctatg |
14180257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 274
Target Start/End: Original strand, 95345 - 95571
Alignment:
| Q |
31 |
tggataaattcatgttttcatcttgcaagattctttcctgaatcacaa---catatatacaattattaatgatgtgtctattaatgatcaatgatatagg |
127 |
Q |
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| T |
95345 |
tggataaattgatattttcatcttgcaagattctttcctgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgat----- |
95439 |
T |
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| Q |
128 |
tgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtat |
227 |
Q |
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| T |
95440 |
---------------taactaaagagagggttagtttaattatatatgtcaccttcctgatcatattatcaatttgctgctgcatgagctcattctgcat |
95524 |
T |
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| Q |
228 |
taaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaat |
274 |
Q |
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| T |
95525 |
taaaaataatgtgtcaataatttgtgttgaaggatagtcatgaaaat |
95571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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