View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_43 (Length: 365)

Name: NF3069_low_43
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_43
NF3069_low_43
[»] chr7 (1 HSPs)
chr7 (74-339)||(11454209-11454470)
[»] chr1 (2 HSPs)
chr1 (139-288)||(18645374-18645523)
chr1 (142-303)||(42377492-42377649)
[»] chr8 (1 HSPs)
chr8 (150-306)||(22472389-22472547)
[»] chr3 (3 HSPs)
chr3 (139-284)||(8363009-8363154)
chr3 (135-267)||(17521910-17522042)
chr3 (139-193)||(17350299-17350352)
[»] chr2 (3 HSPs)
chr2 (142-288)||(30614735-30614881)
chr2 (139-288)||(16374840-16374988)
chr2 (139-284)||(18370607-18370752)
[»] chr6 (3 HSPs)
chr6 (198-284)||(22902094-22902180)
chr6 (223-276)||(22916949-22917002)
chr6 (198-276)||(22884196-22884274)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 74 - 339
Target Start/End: Original strand, 11454209 - 11454470
Alignment:
Q  74 ttgagagatataagggtttaaggatgacaagtgaagttttcctttgtataatttttatttattttatgatgtttgattaggatgctagataatttgacga 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    ||||||||||||||||||||||||||||||||| ||    
T  11454209 ttgagagatataagggtttaaggatgacaagtgaagttttccttagtataattttttttt----tatgatgtttgattaggatgctagataatttgatga 11454304  T
Q  174 tgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttagggttcttcaaagtgttttgtgtgtcaagtttcatttt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11454305 tgtttattgttccttttataatatttagcatattttatagtacctagcaatccatattcttagggttcttcaaagtgttttgtgtgtcaagtttcatttt 11454404  T
Q  274 gtggcaaaacttttttccatccctttgaattgaatcatctgaccttgagttttatcatttttcttc 339  Q
    |||||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||||||    
T  11454405 gtggcaaaacttttttctgtccctttgaattgaatcatctggcattgagttttatcatttttcttc 11454470  T

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Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 18645523 - 18645374
Alignment:
Q  139 atgatgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttaggg 238  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||||  | ||| || | || |||| ||||| ||||||||    
T  18645523 atgatgtttgagtaggatgctagataatttgatgatgtttattgtttcttttataatgtttagcacttcttaaagcatctagcaacccatgctcttaggg 18645424  T
Q  239 ttcttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaacttttt 288  Q
    | ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  18645423 tccttcaaagtgtcttgtgtgtcaagttttattttgtggcaaaacttttt 18645374  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 303
Target Start/End: Original strand, 42377492 - 42377649
Alignment:
Q  142 atgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttagggttc 241  Q
    ||||||||||||||||||||||||||||| ||||||||||| || |||||||||  |||||| | | || || |||| |||||| ||| |||||||||||    
T  42377492 atgtttgattaggatgctagataatttgatgatgtttattgctcattttataat-gttagcaca-tgtaaagcacctagcaatctatgctcttagggttc 42377589  T
Q  242 ttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaacttttttccatccctttgaat 303  Q
    ||| ||| || | ||||||||||||| |||||| | ||||||||||||  ||||||||||||    
T  42377590 ttc-aagcgtctcgtgtgtcaagttttattttgcgacaaaactttttt-tatccctttgaat 42377649  T

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Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 150 - 306
Target Start/End: Complemental strand, 22472547 - 22472389
Alignment:
Q  150 ttaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttagggttcttcaaagt 249  Q
    ||||| ||||||||| |||||  ||||||||||||||||||||| |  ||||||||| ||| || ||   ||||||||||||||||||||||||||||||    
T  22472547 ttaggctgctagatattttgattatgtttattgttccttttatagtgattagcatatgttaaagaacagagcaatccatgttcttagggttcttcaaagt 22472448  T
Q  250 gttttgtgtgtcaagtttcattttgtggcaaaa--cttttttccatccctttgaattga 306  Q
     | ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  22472447 atcttgtgtgtcaagttttattttgtggcaaaactcttttttccatccctttgaattga 22472389  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 8363009 - 8363154
Alignment:
Q  139 atgatgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttaggg 238  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||||| || || ||| || |||| |||||||||  ||||||||    
T  8363009 atgatgtttgattacgatgctagataatttggtgatgtttattgtttcttttataatatttatcacatgttaaagcacctagcaatccatactcttaggg 8363108  T
Q  239 ttcttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaact 284  Q
    ||| ||||||||| ||||||||||||||| ||||| ||||||||||    
T  8363109 ttcctcaaagtgtcttgtgtgtcaagttttattttatggcaaaact 8363154  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 17521910 - 17522042
Alignment:
Q  135 ttttatgatgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttctt 234  Q
    ||||||||||||||||| || || ||||||| |||| ||||| ||||||| ||| |||| | ||||||| || ||| |  || | |||||||||| ||||    
T  17521910 ttttatgatgtttgattgggttgttagataaattgatgatgtctattgtttcttctatattgtttagcacatgttaaaagacttagcaatccatgatctt 17522009  T
Q  235 agggttcttcaaagtgttttgtgtgtcaagttt 267  Q
    ||||||  ||||||||| |||||||||||||||    
T  17522010 agggtttctcaaagtgtcttgtgtgtcaagttt 17522042  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 17350352 - 17350299
Alignment:
Q  139 atgatgtttgattaggatgctagataatttgacgatgtttattgttccttttata 193  Q
    |||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||    
T  17350352 atgatgtttgattaggctgctagatattttgatgat-tttattgttccttttata 17350299  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 142 - 288
Target Start/End: Original strand, 30614735 - 30614881
Alignment:
Q  142 atgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttagggttc 241  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||  || |||| || || ||| || |||| ||||| |||| ||||| |||||    
T  30614735 atgtttgattaggatgctagataatttgatgatgtttatggttccttttacgatgtttaacacatgttaaagcacctagcaatacatgctcttacggttc 30614834  T
Q  242 ttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaacttttt 288  Q
    ||  ||||||||||||||||||||||||||||||  |||||| ||||    
T  30614835 tttgaagtgttttgtgtgtcaagtttcattttgtaacaaaacctttt 30614881  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 16374988 - 16374840
Alignment:
Q  139 atgatgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttaggg 238  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||| |||| ||||| |||||   || ||| || |||| |||||| ||||| ||||||    
T  16374988 atgatgtttgattaggatgttagataatttgatgatatttattgtttcttt-ataatgtttagtgcatgttaaagcacctagcaatctatgtttttaggg 16374890  T
Q  239 ttcttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaacttttt 288  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||||||    
T  16374889 ttcttcaaagtgtcttgtgtgttaagtttcatttcgtggcgaaacttttt 16374840  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 18370607 - 18370752
Alignment:
Q  139 atgatgtttgattaggatgctagataatttgacgatgtttattgttccttttataatatttagcatattttatagtaccttgcaatccatgttcttaggg 238  Q
    |||||||||||||||| |||||| ||  |||| ||||||||||||||  ||||| ||  ||| ||||| ||| || |||| |||||||||| | ||||||    
T  18370607 atgatgtttgattaggttgctaggtatattgatgatgtttattgttctctttatgatgattaccatatgttaaagcacctagcaatccatgattttaggg 18370706  T
Q  239 ttcttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaact 284  Q
    |||||||||||||  ||||| ||||||||||| |||||||||||||    
T  18370707 ttcttcaaagtgtcgtgtgtttcaagtttcatattgtggcaaaact 18370752  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 22902094 - 22902180
Alignment:
Q  198 ttagcatattttatagtaccttgcaatccatgttcttagggttcttcaaagtgttttgtgtgtcaagtttcattttgtggcaaaact 284  Q
    |||| |||| ||| || |||| || ||||||| ||||| | ||||||||||||| | || |||||||||||||||||||||||||||    
T  22902094 ttagtatatattaaagcacctagccatccatgatcttaagtttcttcaaagtgtctcgtctgtcaagtttcattttgtggcaaaact 22902180  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 22916949 - 22917002
Alignment:
Q  223 atccatgttcttagggttcttcaaagtgttttgtgtgtcaagtttcattttgtg 276  Q
    ||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||    
T  22916949 atccatgatcttaagtttcttcaaagtgtcttgtgtgtcaagtttcattttgtg 22917002  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 22884196 - 22884274
Alignment:
Q  198 ttagcatattttatagtaccttgcaatccatgttcttagggttcttcaaagtgttttgtgtgtcaagtttcattttgtg 276  Q
    |||| |||| ||| || |||| || ||||||| ||||| | ||||||||||||| | || |||||||||||||||||||    
T  22884196 ttagtatatattaaagcacctagccatccatgatcttaagtttcttcaaagtgtctcgtctgtcaagtttcattttgtg 22884274  T

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