View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_low_47 (Length: 350)
Name: NF3069_low_47
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 38645296 - 38644977
Alignment:
| Q |
13 |
gaagaaagaaagagataaaacaaaattattttaatttgaaaatcaattttggatatattgtgattgaaaagattatgtgttctcactattaatttcatca |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38645296 |
gaagaaagaaagagataaaacaaa-ttattttaatttgaaaatcaattttggatatattgtgattgaaaagattatgtgttctcactattaatttcatca |
38645198 |
T |
|
| Q |
113 |
gatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaagg------a |
206 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38645197 |
tatgctaaccatcgatcatatcttgcggttatattttgttcctcacatgtgaagtacatgacccctgtctcaccatagcattcaccaaaaagggatactt |
38645098 |
T |
|
| Q |
207 |
attgttcaaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggagcaaactcaatttgcaccgtgggagacctgtttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
38645097 |
attgttcaaacaagttacaggtgaatcatcttgaccgcacaataaataattaatatatctaatggtgcaaactcaatttgcaccgtgagagacctgtttt |
38644998 |
T |
|
| Q |
307 |
gatcggtcacgctagcctccg |
327 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
38644997 |
ggtcgctcacgctagcctccg |
38644977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 13610338 - 13610031
Alignment:
| Q |
17 |
aaagaaagagataaaacaaaattattttaatttgaaaatcaattttggatatattgtgattgaaaagat----tatgtgttctcactattaatttcatca |
112 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||||||||||| ||| |||| | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13610338 |
aaagaaagagagaaaataaa-ttattttaatttgaaaatcaatttttgattaattgagtttgaaaagaaaatatatgtgttctcactattaatttcatca |
13610240 |
T |
|
| Q |
113 |
gatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaaggaattgtt |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || || || |
|
|
| T |
13610239 |
gaagctaacaattgatcatatcttgcggttatattttgtt-ctcacatgtgaactacatgacccctacctcaccatagcattcaccaaaatgggatactt |
13610141 |
T |
|
| Q |
213 |
caaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggagcaaactcaatttgcaccgtgggagacctgttttgatcgg |
312 |
Q |
| |
|
| | || |||||||||| || || ||||||||| ||||||||| ||||| | ||| ||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
13610140 |
-----attcttcaaaagaatcatcttgaccacataataaataattaatatatccaatggtgaaaattcaatttgcactgtgagagacctgttttggtcgc |
13610046 |
T |
|
| Q |
313 |
tcacgctagcctccg |
327 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13610045 |
tcacgctagcctccg |
13610031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 35 - 332
Target Start/End: Complemental strand, 33641802 - 33641507
Alignment:
| Q |
35 |
aaattattttaatttgaaaatcaattttggatatattgtgattgaaaagat----tatgtgttctcactattaatttcatcagatgctaacaattgatca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33641802 |
aaattattttaatttgaaaatcaatttttgattaattgtgtttgaaaagaaaatatatgtgttctcactattaatttcatcagaagctaacaattgatca |
33641703 |
T |
|
| Q |
131 |
tatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaaggaattgttcaaacaagttacaggtga |
230 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| || || || | | || || |
|
|
| T |
33641702 |
tatcttgcggttatattttgtt-ctcacatgtgaagtacatgacccctgcctcaccatagcattcacccaaatgggatactt-----attcttcaaaaga |
33641609 |
T |
|
| Q |
231 |
atcatctttgccgcacaataaataaataatatatctaatggagcaaactcaatttgcaccgtgggagacctgttttgatcggtcacgctagcctccgacc |
330 |
Q |
| |
|
|||||||| || || ||||||||| ||||||||| ||||| | ||| |||||||||| |||| ||||||||||||| ||| ||||||| ||||||| || |
|
|
| T |
33641608 |
atcatcttgaccacataataaataattaatatatccaatggtgaaaattcaatttgcatcgtgagagacctgttttggtcgctcacgctggcctccgccc |
33641509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 54131484 - 54131172
Alignment:
| Q |
17 |
aaagaaagagataaaacaaaattattttaatttgaaaatcaattttggatatattgtgattgaaaagattat----gtgttctcactattaatttcatca |
112 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||||||||||| ||| |||| | ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
54131484 |
aaagaaagagagaaaataaa-ttattttaatttgaaaatcaatttttgattaattgagtttgaaaagaaaatatacgtgttctcactattaatttcatca |
54131386 |
T |
|
| Q |
113 |
gatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaaaaaggaattgtt |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| || || || |
|
|
| T |
54131385 |
gaagctaacaattgatcatatcttgcggttatattttgtt-ctcacatgtgaattacatgacccctacctcaccatagcattcaccaaaatgggatactt |
54131287 |
T |
|
| Q |
213 |
caaacaagttacaggtgaatcatctttgccgcacaataaataaataatatatctaatggagcaaactcaatttgcaccgtgggagacctgttttgatcgg |
312 |
Q |
| |
|
| | || |||||||||| || || ||||||||| ||||||||| ||||| | ||| ||||||||||||||| |||| |||||||| ||| |
|
|
| T |
54131286 |
-----attcttcaaaagaatcatcttgaccacataataaataattaatatatccaatggtgaaaattcaatttgcaccgtgagagatctgttttggtcgc |
54131192 |
T |
|
| Q |
313 |
tcacgctagcctccgaccat |
332 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
54131191 |
tcacgctagcctccgcccat |
54131172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 23508368 - 23508471
Alignment:
| Q |
101 |
ttaatttcatcagatgctaacaattgatcatatcttgcggttatattttgttcctcacatgtgaactacatgacccctgcctcaccatagcattcaccaa |
200 |
Q |
| |
|
|||||||| |||||| | || ||||||||||||| |||||||||||||||| ||||| ||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
23508368 |
ttaatttcctcagatcatgaccattgatcatatctcacggttatattttgttcatcacaagtgaagtactttacccctacctcaccatagcattcaccaa |
23508467 |
T |
|
| Q |
201 |
aaag |
204 |
Q |
| |
|
|||| |
|
|
| T |
23508468 |
aaag |
23508471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University