View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_48 (Length: 348)

Name: NF3069_low_48
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_48
NF3069_low_48
[»] chr2 (3 HSPs)
chr2 (7-332)||(4243048-4243359)
chr2 (100-238)||(42703922-42704060)
chr2 (90-211)||(647269-647389)
[»] chr5 (7 HSPs)
chr5 (95-332)||(33496188-33496425)
chr5 (90-274)||(42577922-42578106)
chr5 (100-202)||(13093675-13093777)
chr5 (123-238)||(23150040-23150155)
chr5 (100-202)||(13022151-13022253)
chr5 (90-227)||(14277195-14277332)
chr5 (87-217)||(7273756-7273886)
[»] chr3 (7 HSPs)
chr3 (90-246)||(52966041-52966197)
chr3 (90-227)||(51141345-51141482)
chr3 (126-238)||(2500409-2500521)
chr3 (123-275)||(2332410-2332561)
chr3 (102-183)||(24596131-24596212)
chr3 (144-238)||(39695227-39695321)
chr3 (127-172)||(4755709-4755754)
[»] chr1 (9 HSPs)
chr1 (87-227)||(14647356-14647496)
chr1 (87-238)||(12459977-12460128)
chr1 (100-238)||(13189520-13189658)
chr1 (90-227)||(51492973-51493110)
chr1 (98-238)||(20128381-20128521)
chr1 (100-238)||(27644551-27644689)
chr1 (129-203)||(50181614-50181688)
chr1 (137-208)||(27465617-27465688)
chr1 (87-202)||(44138466-44138581)
[»] chr7 (8 HSPs)
chr7 (90-208)||(46598537-46598655)
chr7 (90-208)||(31801220-31801338)
chr7 (90-196)||(512590-512696)
chr7 (123-238)||(12351931-12352046)
chr7 (123-205)||(41146525-41146607)
chr7 (100-202)||(43968796-43968898)
chr7 (87-223)||(18222698-18222834)
chr7 (91-201)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (90-227)||(21731033-21731170)
chr6 (87-238)||(16861976-16862127)
chr6 (126-196)||(10160191-10160261)
[»] scaffold0703 (1 HSPs)
scaffold0703 (87-238)||(869-1020)
[»] chr4 (4 HSPs)
chr4 (90-238)||(54422604-54422752)
chr4 (123-205)||(32498317-32498399)
chr4 (90-167)||(29016903-29016980)
chr4 (121-202)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (126-196)||(9181967-9182037)
chr8 (126-196)||(11626236-11626306)
chr8 (97-196)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (126-208)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (87-235)||(237888-238036)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 4243048 - 4243359
Alignment:
Q  7 ctaatatctctcaatgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctagacgggattt 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  4243048 ctaatatctctcagtgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctagacgggact- 4243146  T
Q  107 cttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagat 206  Q
                |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  4243147 ------------gattggtcataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa-attggagat 4243233  T
Q  207 ggctcaaaaataaatgtatggaccatgccttgtatacgtactcttccttctcacaacccctcaactcctatgccggctcatcatgaagaccttacagtga 306  Q
    ||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4243234 ggctcgaaaataaatctatggaccatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagaccttacagtga 4243333  T
Q  307 attacttgttgaatctggaaggcctc 332  Q
    ||||||||||||||||||||||||||    
T  4243334 attacttgttgaatctggaaggcctc 4243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 42704060 - 42703922
Alignment:
Q  100 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 199  Q
    ||||||||||||| |  || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| ||| | ||||| || |||||||||| || ||| ||    
T  42704060 gggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgcttacattgggtcatatattgaagat 42703961  T
Q  200 tggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    ||| |||||  | ||||| ||||| |||| |||||||||    
T  42703960 tggtgatggtgccaaaattaatgtgtggaacatgccttg 42703922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 647269 - 647389
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    ||||||||||| ||||||||||| || ||  | || || || ||| |||| || ||||||||||||||||||||||||| ||| || || |||||  |||    
T  647269 ttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatata 647368  T
Q  190 gatggaatattggagatggctc 211  Q
    ||||||| ||||| ||||||||    
T  647369 gatggaa-attggtgatggctc 647389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 332
Target Start/End: Complemental strand, 33496425 - 33496188
Alignment:
Q  95 tagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa-tatttgctcactttgggtcatagatg 193  Q
    |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  33496425 tagatgggatttattggacgaaccgattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatg 33496326  T
Q  194 gaatattggagatggctcaaaaataaatgtatggaccatgccttgtatacgtactcttccttctcacaacccctcaactcctatgccggctcatcatgaa 293  Q
    ||| |||||||||||||| ||||||||| |||| |||||||| || ||||||| |||| |||||||||| || ||||||||||||||| ||| |||||||    
T  33496325 gaagattggagatggctcgaaaataaatctatgtaccatgccatgaatacgtaatctttcttctcacaaaccttcaactcctatgccgtctcttcatgaa 33496226  T
Q  294 gaccttacagtgaattacttgttgaatctggaaggcctc 332  Q
    || |||||||||||||||||| |||||| ||||||||||    
T  33496225 gatcttacagtgaattacttgctgaatc-ggaaggcctc 33496188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 42578106 - 42577922
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  42578106 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 42578007  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttgtatacgtactcttccttctcacaacccctcaactcc 274  Q
    ||||||| ||||||||||| ||||| |||||||||||| | |||||||| |||||||   ||||||| ||||| || ||||||||    
T  42578006 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgtagcattccttcacacaaaccttcaactcc 42577922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 13093777 - 13093675
Alignment:
Q  100 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 199  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| ||    
T  13093777 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaat 13093678  T
Q  200 tgg 202  Q
    |||    
T  13093677 tgg 13093675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 23150040 - 23150155
Alignment:
Q  123 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 222  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| || ||  |||| ||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggttctcaaattaatg 23150139  T
Q  223 tatggaccatgccttg 238  Q
    | ||||  ||||||||    
T  23150140 tgtggagtatgccttg 23150155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 13022253 - 13022151
Alignment:
Q  100 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 199  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| |||| || ||||||||| |||||||||| ||    
T  13022253 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaat 13022154  T
Q  200 tgg 202  Q
    |||    
T  13022153 tgg 13022151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 14277332 - 14277195
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||| | ||||| ||||||||||  ||  |||||||||||||| |||| |   |||||||||| ||||||||||||| | ||   || ||||||||||    
T  14277332 ttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtactcaatctctgtatacattgggtcata 14277233  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatgg 227  Q
    ||||||| |||||||  || |||||||||||| |||||    
T  14277232 gatggaagattggaggcggttcaaaaataaatttatgg 14277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 7273756 - 7273886
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| |||| |||||||| || || |||||||| ||| |||| || || |||||||    
T  7273756 tatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtc 7273855  T
Q  187 atagatggaatattggagatggctcaaaaat 217  Q
    || ||||||| ||| ||||||| || |||||    
T  7273856 atggatggaagattagagatggttccaaaat 7273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 52966197 - 52966041
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  52966197 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 52966098  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttgtatacgta 246  Q
    ||||||| ||||||||||| ||||| |||||||||||| | |||||||| |||||||    
T  52966097 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgta 52966041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 51141482 - 51141345
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||| | ||||| ||||||||||| || ||||||||||||||| | || |||||||| | ||| ||||||||||||||| |||| || ||||||||||    
T  51141482 ttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcata 51141383  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatgg 227  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51141382 gatggaagattggagatggttcaaaaataaatgtatgg 51141345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 2500521 - 2500409
Alignment:
Q  126 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtat 225  Q
    ||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||| |    
T  2500521 cataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggctctcaaattaatgtgt 2500422  T
Q  226 ggaccatgccttg 238  Q
    |||  ||||||||    
T  2500421 ggagtatgccttg 2500409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 275
Target Start/End: Original strand, 2332410 - 2332561
Alignment:
Q  123 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 222  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || || |||  | |||||||||| ||||| |||||||| ||||| ||||    
T  2332410 ggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaattaatg 2332508  T
Q  223 tatggaccatgccttgtatacgtactcttccttctcacaacccctcaactcct 275  Q
    | ||||  ||||||||  | |||| |||  |||||| ||| ||||| ||||||    
T  2332509 tgtggaaaatgccttggcttcgtaatctgacttctctcaagccctccactcct 2332561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 24596212 - 24596131
Alignment:
Q  102 gatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgg 183  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||||||| |||||| | |||| ||| || |||||||    
T  24596212 gatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatctttacttactttgg 24596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 39695321 - 39695227
Alignment:
Q  144 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    ||||||||||| |||||||||||| | |  || | ||||||||||| |||||| ||||| || ||||| ||||| ||||| || | |||||||||    
T  39695321 tggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtgaaacatgccttg 39695227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 4755754 - 4755709
Alignment:
Q  127 ataatccatgctatacatggaggagtctatggagtactcaatattt 172  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  4755754 ataatccaagctatacatggaggagtctttggagtacccaaaattt 4755709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 14647356 - 14647496
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||| | ||||| ||||||||||||||  ||| |||||||||| |||| | |||||||||||| ||||||||||||| | |||| || |||||||    
T  14647356 tatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtc 14647455  T
Q  187 atagatggaatattggagatggctcaaaaataaatgtatgg 227  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  14647456 atagatggaaaattggagatggttcaaaaataaatgtatgg 14647496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 12460128 - 12459977
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||| ||||  || || || |||||      
T  12460128 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggct 12460029  T
Q  187 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    |||||||||| |||||  ||||||||||||||||||| ||| | ||||||||    
T  12460028 atagatggaagattggtaatggctcaaaaataaatgtgtggtcaatgccttg 12459977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 13189658 - 13189520
Alignment:
Q  100 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 199  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| |||||||||||| |||| || || |||||| |||||||||| ||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaat 13189559  T
Q  200 tggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    |||||||||||| ||||| || || || | |||||||||    
T  13189558 tggagatggctctaaaatcaacgtgtgaaacatgccttg 13189520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 51493110 - 51492973
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||||||  ||||||||||||||| ||  |||| ||||||||| ||||  |||||||| |||| ||||| ||||||| ||| || || ||||||||||    
T  51493110 ttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcata 51493011  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatgg 227  Q
    ||||||| ||||||| ||| ||||| ||||||||||||    
T  51493010 gatggaagattggagctggttcaaacataaatgtatgg 51492973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 20128381 - 20128521
Alignment:
Q  98 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 197  Q
    ||||||||||||||| |||||  |||||||||||||| |||| || |||||||||||||||||||| |||| | | || || ||||| |||||||||||     
T  20128381 acgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaag 20128480  T
Q  198 attggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    ||||| |||||| ||||||| ||| | ||||  ||||||||    
T  20128481 attggtgatggcacaaaaattaatatgtggagtatgccttg 20128521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 27644689 - 27644551
Alignment:
Q  100 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 199  Q
    ||||||||||||||||  |  |||||||||||||| ||||||| ||||||||||| |||||||| ||  | ||||| || || || || || ||||| ||    
T  27644689 gggatttcttggatgcctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagat 27644590  T
Q  200 tggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    |||| |||| || ||||||||||| ||||| ||||||||    
T  27644589 tggaaatggttccaaaataaatgtgtggactatgccttg 27644551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 50181614 - 50181688
Alignment:
Q  129 aatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgga 203  Q
    |||||| | |||||||||||||||||||||||||| |||| ||| || || || || ||||||||||| ||||||    
T  50181614 aatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattgga 50181688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 27465617 - 27465688
Alignment:
Q  137 ctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 208  Q
    |||||| |||| |||||||||||||||||||| ||| || | ||||||||||  |||||| ||||| |||||    
T  27465617 ctatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatgg 27465688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 44138466 - 44138581
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||  || |||||||||||||||| ||  | || ||||||||| |||| || ||||| || ||||||||| | ||| |||| || || ||||| |    
T  44138466 tatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggac 44138565  T
Q  187 atagatggaatattgg 202  Q
    |||||||||| |||||    
T  44138566 atagatggaagattgg 44138581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 46598537 - 46598655
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  46598537 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccata 46598636  T
Q  190 gatggaatattggagatgg 208  Q
    ||||||| |||||||||||    
T  46598637 gatggaagattggagatgg 46598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 31801220 - 31801338
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||||||| ||| |||||||||||  |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  31801220 ttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccata 31801319  T
Q  190 gatggaatattggagatgg 208  Q
    ||||||| |||||||||||    
T  31801320 gatggaagattggagatgg 31801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 512590 - 512696
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| || |||||  ||||||||||||||| ||| || |||||||| ||||    
T  512590 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccata 512689  T
Q  190 gatggaa 196  Q
    |||||||    
T  512690 gatggaa 512696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 12352046 - 12351931
Alignment:
Q  123 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 222  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattggagacggctctcaaattaatg 12351947  T
Q  223 tatggaccatgccttg 238  Q
    | ||||  ||||||||    
T  12351946 tgtggagtatgccttg 12351931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 41146525 - 41146607
Alignment:
Q  123 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 205  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 41146607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 43968796 - 43968898
Alignment:
Q  100 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 199  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| || |||||||| |||||||||||| ||||||| ||||||||| ||| |||||| ||    
T  43968796 gggatttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaat 43968895  T
Q  200 tgg 202  Q
    |||    
T  43968896 tgg 43968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 18222834 - 18222698
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| ||||||| ||||||||||| ||||||| |||||  || || || ||||| |    
T  18222834 tatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggc 18222735  T
Q  187 atagatggaatattggagatggctcaaaaataaatgt 223  Q
    |||||||||| |||||||| ||  | |||||||||||    
T  18222734 atagatggaagattggagacggtactaaaataaatgt 18222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 31402552 - 31402662
Alignment:
Q  91 tccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatag 190  Q
    |||||||| ||||| ||| |||||||   ||||||||||||||| ||| ||||||||||||  | |||||| | ||| |  |  ||||||||||| ||||    
T  31402552 tccctagaagggatatctcggatgcaaatattggtcataatccaagctttacatggaggagcatttggagttcccaaaaccttatcactttgggttatag 31402651  T
Q  191 atggaatattg 201  Q
    |||||| ||||    
T  31402652 atggaagattg 31402662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 21731170 - 21731033
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    |||||| | ||||| ||||||||||||||  |||||||||||||| |||| | |||||||||||| ||||||||||||| | | || || ||||| ||||    
T  21731170 ttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttcttaccttgggccata 21731071  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatgg 227  Q
    ||||||| ||| |||| || ||||||||||||||||||    
T  21731070 gatggaaaattagagacggttcaaaaataaatgtatgg 21731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 16861976 - 16862127
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||| |||||||  ||||  || || || |||||      
T  16861976 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggct 16862075  T
Q  187 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | ||||||||    
T  16862076 atagatggaagattggtaatggttcaaatataaatgtgtggccaatgccttg 16862127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 10160261 - 10160191
Alignment:
Q  126 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 196  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 10160191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 1020 - 869
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||  ||||  || || || |||||      
T  1020 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggct 921  T
Q  187 atagatggaatattggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | ||||||||    
T  920 atagatggaagattggtaatggttcaaatataaatgtgtggtcaatgccttg 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 238
Target Start/End: Complemental strand, 54422752 - 54422604
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 189  Q
    ||||| || |||||||||||||| ||||   ||||||| |||||| |||| || || ||||||||||||||| | |||| | |||| || ||||| ||||    
T  54422752 ttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcata 54422653  T
Q  190 gatggaatattggagatggctcaaaaataaatgtatggaccatgccttg 238  Q
    ||||||| || || |||||||||||||| ||| | ||||  ||||||||    
T  54422652 gatggaagatcggtgatggctcaaaaattaatatgtggagtatgccttg 54422604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 32498317 - 32498399
Alignment:
Q  123 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 205  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 32498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 29016903 - 29016980
Alignment:
Q  90 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa 167  Q
    ||||||||| |||||||||||||| | |  |||||||| |||||| ||||||| ||||||||  |||||||| |||||    
T  29016903 ttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagttctcaa 29016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 43732685 - 43732766
Alignment:
Q  121 ttggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgg 202  Q
    |||||||||||||| |||| || ||||| ||||| |||||| | ||| | ||  | |||||||||||||||||||| |||||    
T  43732685 ttggtcataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattgg 43732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 9182037 - 9181967
Alignment:
Q  126 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 196  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 9181967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 11626236 - 11626306
Alignment:
Q  126 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 196  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 11626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 29929738 - 29929639
Alignment:
Q  97 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 196  Q
    |||||||||||||||| |  ||  |||||||||||||| || | || || |||||||| |||||||   || | ||||| ||||||||||||||||||||    
T  29929738 gacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagtatctaacacttgcttactttgggtcatagatggaa 29929639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 189684 - 189602
Alignment:
Q  126 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 208  Q
    ||||||||| | | ||||||||||||||| | ||||||||||| ||| ||||| ||||| ||||||||||  ||||| |||||    
T  189684 cataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatgg 189602  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 238036 - 237888
Alignment:
Q  87 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 186  Q
    ||||||||| | |||||||||||||||||    ||||| || |||||| |||  || ||||||||  |||||||| |||||| | | || || |||||      
T  238036 tatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggct 237937  T
Q  187 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcc 235  Q
    |||||||||| ||||| || || || ||||| ||||| ||| |||||||    
T  237936 atagatggaagattggtgacggttcgaaaatcaatgtttggtccatgcc 237888  T

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