View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_51 (Length: 345)

Name: NF3069_low_51
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_51
NF3069_low_51
[»] chr2 (8 HSPs)
chr2 (12-342)||(27148775-27149105)
chr2 (239-319)||(27149432-27149512)
chr2 (239-319)||(2869832-2869914)
chr2 (239-305)||(8039955-8040019)
chr2 (239-304)||(31055938-31056001)
chr2 (239-304)||(34682472-34682535)
chr2 (239-304)||(10445582-10445646)
chr2 (239-304)||(14699132-14699199)
[»] chr7 (6 HSPs)
chr7 (20-112)||(15486282-15486374)
chr7 (239-342)||(3047109-3047215)
chr7 (239-304)||(9235693-9235758)
chr7 (239-342)||(28617363-28617467)
chr7 (239-304)||(4796805-4796871)
chr7 (239-304)||(29159699-29159762)
[»] chr4 (5 HSPs)
chr4 (239-304)||(38152576-38152641)
chr4 (239-319)||(37781743-37781822)
chr4 (239-304)||(25862160-25862223)
chr4 (239-304)||(54867078-54867143)
chr4 (236-300)||(39245893-39245956)
[»] chr8 (3 HSPs)
chr8 (238-315)||(5990698-5990771)
chr8 (239-304)||(6127115-6127179)
chr8 (250-302)||(7493210-7493261)
[»] scaffold0184 (1 HSPs)
scaffold0184 (239-300)||(29620-29681)
[»] scaffold0148 (1 HSPs)
scaffold0148 (239-304)||(10624-10688)
[»] scaffold0078 (1 HSPs)
scaffold0078 (239-300)||(43163-43224)
[»] chr5 (5 HSPs)
chr5 (236-297)||(42127545-42127606)
chr5 (239-304)||(19588642-19588705)
chr5 (244-318)||(34842485-34842558)
chr5 (239-304)||(11181970-11182035)
chr5 (239-287)||(3880211-3880259)
[»] chr3 (4 HSPs)
chr3 (239-305)||(27038185-27038249)
chr3 (239-304)||(40592911-40592974)
chr3 (236-304)||(3328481-3328547)
chr3 (236-304)||(48438110-48438176)
[»] chr1 (4 HSPs)
chr1 (236-303)||(19072823-19072889)
chr1 (236-303)||(19120713-19120779)
chr1 (239-304)||(775568-775631)
chr1 (239-304)||(40816870-40816934)
[»] chr6 (3 HSPs)
chr6 (239-304)||(10077303-10077366)
chr6 (239-304)||(22963595-22963659)
chr6 (239-304)||(23824734-23824798)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 27148775 - 27149105
Alignment:
Q  12 gaatcaaccaccgtagaagggtgtgaaacggcaatgaaaactaaaggaaagaggtgattggagcaacgtcggagcttggccggagaaagattaggttgcc 111  Q
    |||||| ||||||||||||||||||||| | | ||||||||| ||||||||||||||| ||||||| | ||||||||||| |||||||||| ||||||||    
T  27148775 gaatcagccaccgtagaagggtgtgaaatgaccatgaaaactgaaggaaagaggtgatcggagcaatgccggagcttggctggagaaagatgaggttgcc 27148874  T
Q  112 gnnnnnnncggttacaggggacatttccnnnnnnnnnnnnttttagaaaatccattagttgttggaaatagtggaggcattgagcaatcctgtcatattt 211  Q
    |       ||||||||||  |||||||             |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  27148875 gaaaaaaacggttacaggtcacatttctagagagagagagttttagaaaatccattagttgccggaaatagtggaggcattgagcaatcctgtcgtattt 27148974  T
Q  212 ctttgtactactacactctcaaggtgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctac 311  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27148975 ctttgtactactacactcttatggtgttttgaatatgcttgtggtgttgctttacaaatagatttagatctatgttattgttgttgttgcttgatgctac 27149074  T
Q  312 tttactcactgaatatcactttctctgctcc 342  Q
    |||||||| ||| ||||||||||| ||||||    
T  27149075 tttactcattgattatcactttctttgctcc 27149105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 27149432 - 27149512
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactca 319  Q
    |||||||||| || |||| |||||||||| ||||||||||| ||||||| ||||| ||||| ||||| |||||||||||||    
T  27149432 tttgaatatgtttatggtattgctttacacatagatttagaactattttgttgttattgttacttgaggctactttactca 27149512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 2869832 - 2869914
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatt--ttattgttgttgttgcttgatgctactttactca 319  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||  || |||||||||||| ||||||||||||||||||    
T  2869832 tttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttgttgttgttgtttgatgctactttactca 2869914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 8040019 - 8039955
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttga 305  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  |||||||||||||||||    
T  8040019 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttga 8039955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 31056001 - 31055938
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  31056001 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 31055938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 34682472 - 34682535
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  34682472 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 34682535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 10445582 - 10445646
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||| ||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  10445582 tttgattatgcttgtggttttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttg 10445646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 14699132 - 14699199
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatct--attttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||   |||| ||||||||||||||||    
T  14699132 tttgattatgcttgtggtgttgctctacacttagatttaggtctgctttttgttgttgttgttgcttg 14699199  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 15486282 - 15486374
Alignment:
Q  20 caccgtagaagggtgtgaaacggcaatgaaaactaaaggaaagaggtgattggagcaacgtcggagcttggccggagaaagattaggttgccg 112  Q
    |||||||||||||||||||| |||  |||||||| |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  15486282 caccgtagaagggtgtgaaatggccgtgaaaactgaaggaaagaggtgatcagagcaacgccggagcttggccggagaaagattaggttgccg 15486374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 342
Target Start/End: Complemental strand, 3047215 - 3047109
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatt---ttattgttgttgttgcttgatgctactttactcactgaatatcactttct 335  Q
    ||||| ||||||||||||||||||||||| | || |||||| |||||   |||||||||||||||||||| |  |||||||||| ||| |||||||||||    
T  3047215 tttgattatgcttgtggtgttgctttacacacagttttagaactattttgttattgttgttgttgcttgaggacactttactcattgattatcactttct 3047116  T
Q  336 ctgctcc 342  Q
     ||||||    
T  3047115 ttgctcc 3047109  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 9235693 - 9235758
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  9235693 tttgattatgcttgtggtgttgctctacatttagatttaggtctgtttttttgttgttgttgcttg 9235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 28617363 - 28617467
Alignment:
Q  239 tttgaatatgcttgtggtgttgcttt-acaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctct 337  Q
    |||||||||||||||||||||||||| ||    ||| |||| |||||||| ||||| ||||| ||||| ||||||||||||| ||| || ||||| || |    
T  28617363 tttgaatatgcttgtggtgttgcttttactctaagacttaggtctattttgttgttcttgtttcttgaggctactttactcattgattaccacttccttt 28617462  T
Q  338 gctcc 342  Q
    |||||    
T  28617463 gctcc 28617467  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 4796805 - 4796871
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatct-attttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||  |||| ||||||||||||||||    
T  4796805 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttttttttgttgttgttgcttg 4796871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 29159762 - 29159699
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  29159762 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 29159699  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 38152576 - 38152641
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||||||||||||||||||||    
T  38152576 tttgattatgcttgtggtgttgctatacacttagatctaggtctgttttattgttgttgttgcttg 38152641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 37781822 - 37781743
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactca 319  Q
    ||||||||||||||||||||||||| |||  ||||| ||| |||| ||| ||| |||||||| |||||| |||||||||||    
T  37781822 tttgaatatgcttgtggtgttgcttcacacttagatctaggtcta-tttgttgatgttgttgattgatgatactttactca 37781743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 25862160 - 25862223
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  25862160 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 25862223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 54867143 - 54867078
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| |||| ||||||||||||||||    
T  54867143 tttgattatgcttgtggtgttgctctacacttagatctatgtctgtttttttgttgttgttgcttg 54867078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 39245956 - 39245893
Alignment:
Q  236 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttg 300  Q
    |||||||| ||||| |||||||||||| ||||  ||||||||| ||| |||| ||||||||||||    
T  39245956 tgttttgattatgcctgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttg 39245893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 5990698 - 5990771
Alignment:
Q  238 ttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctacttta 315  Q
    ||||||||||||||||||| ||| | ||||  ||||||||| |||||||    |||||||||||||||||||||||||    
T  5990698 ttttgaatatgcttgtggttttgttctacacttagatttaggtctattt----gttgttgttgcttgatgctacttta 5990771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 6127179 - 6127115
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  || ||||| |||| |||| ||||||||||||||||    
T  6127179 tttgattatgcttgtggtgttgctctacacttaaatttatatctgtttt-ttgttgttgttgcttg 6127115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 7493210 - 7493261
Alignment:
Q  250 ttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgct 302  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||||||||||||||    
T  7493210 ttgtggtgttgctctacacttagatttagatcta-tttgttgttgttgttgct 7493261  T

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Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 29620 - 29681
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttg 300  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| ||||||||||||    
T  29620 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttg 29681  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 10688 - 10624
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  10688 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttg 10624  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 43224 - 43163
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttg 300  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| ||||||||||||    
T  43224 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttg 43163  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 42127545 - 42127606
Alignment:
Q  236 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttg 297  Q
    |||||||| |||||||||||||||||| ||||| ||||||||  ||| |||| |||||||||    
T  42127545 tgttttgattatgcttgtggtgttgctctacaattagatttaagtctgttttgttgttgttg 42127606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 19588705 - 19588642
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||  |||| ||||||||||||||||    
T  19588705 tttgattatgcttgtggtgttgctctacacttagatttaggtc--tttttttgttgttgttgcttg 19588642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 34842558 - 34842485
Alignment:
Q  244 atatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactc 318  Q
    |||||||||||||||||||| |||  ||||| ||| | | ||| |||||||||| ||||||| ||||||||||||    
T  34842558 atatgcttgtggtgttgcttcacacttagatctaggtttgttt-attgttgttgctgcttgaggctactttactc 34842485  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 11181970 - 11182035
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||| ||||| ||||  ||||||||  ||| |||| ||||||||||||||||    
T  11181970 tttgattatgcttgtggtattgctctacacttagatttaagtctgtttttttgttgttgttgcttg 11182035  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 3880259 - 3880211
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatttt 287  Q
    ||||| |||||||||||||||||||||||  ||||||||| ||| ||||    
T  3880259 tttgattatgcttgtggtgttgctttacacttagatttaggtctgtttt 3880211  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 27038249 - 27038185
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttga 305  Q
    ||||| |||||||||||||||||| ||||  ||||| ||||||| |||  |||||||||||||||||    
T  27038249 tttgattatgcttgtggtgttgctctacacttagatctagatctgttt--ttgttgttgttgcttga 27038185  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 40592911 - 40592974
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  40592911 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 40592974  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 3328481 - 3328547
Alignment:
Q  236 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||| ||||    
T  3328481 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgtttcttg 3328547  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 48438176 - 48438110
Alignment:
Q  236 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    |||||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||||||||    
T  48438176 tgttttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttgcttg 48438110  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 19072889 - 19072823
Alignment:
Q  236 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgctt 303  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||    
T  19072889 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgctt 19072823  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 19120779 - 19120713
Alignment:
Q  236 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgctt 303  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||    
T  19120779 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgctt 19120713  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 775631 - 775568
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  775631 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 775568  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 40816870 - 40816934
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||| ||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||    
T  40816870 tttgattatgctcgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttg 40816934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 10077303 - 10077366
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||    
T  10077303 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttg 10077366  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 22963659 - 22963595
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||    
T  22963659 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttg 22963595  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 23824734 - 23824798
Alignment:
Q  239 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 304  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||    
T  23824734 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttg 23824798  T

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