View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_53 (Length: 340)
Name: NF3069_low_53
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 34846004 - 34846309
Alignment:
| Q |
13 |
aatatgactatgaaatggttctagttttctcaaaaactggttgaaaaagatgagtaataaatgataactatcacatttttcatggctcccaagagtatat |
112 |
Q |
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| T |
34846004 |
aatatgactatgaaatggttctagttttctcaaaaactggttgaaaaagatgagtaataaatgataattatcacatttttcatggctcccaagggtatat |
34846103 |
T |
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| Q |
113 |
taaaggaaaaggaacaatatagtttatagaaattgatgaaaaaataaaatcactttttataggacttaannnnnnnnnnaaaagaacttattcatttttg |
212 |
Q |
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| T |
34846104 |
taaaggaaaaggaacaatatagtttatagaaattgatgaaaaaataaaatcactttttataggacttaa-tttttttttaaaagaacttattcatttttg |
34846202 |
T |
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| Q |
213 |
gtaattaatttcttttaacttaaaatataaactcggacaagagtgagatgg-tttgaagttaactgataatgaaatcatgagttcaactttttgcgatag |
311 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||| |
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| T |
34846203 |
gtatttaatttcttttaacttaaaatatgaactcggacaagagtgagatggttttgaagttaagtgataatgagatcatgagttcaactctttgcgatag |
34846302 |
T |
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| Q |
312 |
ccggtag |
318 |
Q |
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||||||| |
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| T |
34846303 |
ccggtag |
34846309 |
T |
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