View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_57 (Length: 309)
Name: NF3069_low_57
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 13578649 - 13578930
Alignment:
| Q |
10 |
cgttggaaaataataaacattccttttttgaaaacccagagacnnnnnnncttcacccgttaacctttcttctctacacacactgcaaaatcataacgaa |
109 |
Q |
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| T |
13578649 |
cgttggaaaataataaacattccttttttgaaaacccagagtctttttttcttcacccgttaacctctcttctctacacacactgcaaaatcataacgaa |
13578748 |
T |
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| Q |
110 |
atcaacaagaaccagtaacattgttcgtttgcgagagagtaacagcgacgaaaatggtggaaagtgatgaacaaaaacgaagccccgtgatccgaaagaa |
209 |
Q |
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| T |
13578749 |
atcaacaataaccagtaacattgttcgtttgcgagagagtaacagcgacgaaaatggtggaaagtgatgaacaaaaacgaagccccgtgatccgaaagaa |
13578848 |
T |
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| Q |
210 |
aacagcgacgaatagccaaaacatggcttcacttattagtccgagattcaaatctgctgctgctatggctggttgggatgaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13578849 |
aacagcgacgaatagccaaaacatggcttcacttattagtccgagattcaaatctgctgctgctatggctggttgggatgaa |
13578930 |
T |
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