View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_65 (Length: 293)

Name: NF3069_low_65
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_65
NF3069_low_65
[»] chr1 (13 HSPs)
chr1 (1-275)||(15023277-15023551)
chr1 (1-275)||(15009160-15009434)
chr1 (55-275)||(15030312-15030532)
chr1 (3-275)||(15000550-15000828)
chr1 (1-272)||(14501730-14501981)
chr1 (8-271)||(15035044-15035303)
chr1 (99-274)||(14465698-14465876)
chr1 (216-274)||(14534787-14534845)
chr1 (1-73)||(14534966-14535038)
chr1 (143-274)||(15015702-15015833)
chr1 (6-48)||(15015581-15015623)
chr1 (161-266)||(14480658-14480763)
chr1 (1-37)||(15030272-15030308)
[»] scaffold0400 (2 HSPs)
scaffold0400 (97-269)||(5104-5276)
scaffold0400 (110-274)||(10616-10780)
[»] scaffold0365 (2 HSPs)
scaffold0365 (97-269)||(5748-5920)
scaffold0365 (110-274)||(11259-11423)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 15023277 - 15023551
Alignment:
Q  1 atgcattataaatatcacctacatctcccattataatgcattcatcatgatatgagtgtctaattcaattatatatatttcagtgattgccaataatttc 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||||||||    
T  15023277 atgcattataaatatcacctaaatctcccattgtaatgcattcatcatgatacaagtgtctagttcaattatatatatctcagtgattgccaataatttc 15023376  T
Q  101 attgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15023377 attgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctaagtgtttgtaattgcaacatcacctca 15023476  T
Q  201 tgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagcag 275  Q
    ||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  15023477 tgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaaacaagccttgacaaccatagcag 15023551  T

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Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 15009160 - 15009434
Alignment:
Q  1 atgcattataaatatcacctacatctcccattataatgcattcatcatgatatgagtgtctaattcaattatatatatttcagtgattgccaataatttc 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||||||||    
T  15009160 atgcattataaatatcacctaaatctcccattgtaatgcattcatcatgatacaagtgtctagttcaattatatatatctcagtgattgccaataatttc 15009259  T
Q  101 attgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15009260 attgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgccatgtcttattttgttcttctatgtgtttgtaattgcaacatcacctca 15009359  T
Q  201 tgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagcag 275  Q
    ||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  15009360 tgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcag 15009434  T

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Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 55 - 275
Target Start/End: Original strand, 15030312 - 15030532
Alignment:
Q  55 agtgtctaattcaattatatatatttcagtgattgccaataatttcattgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcat 154  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15030312 agtgtctagttcaattatatatatctcagtgcttgccaataatttcattctgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgccat 15030411  T
Q  155 gtcttattttgttcttctacgtgtttgtaattgcaacatcacctcatgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagc 254  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |    
T  15030412 gtcttattttgttcttctatgtgtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatc 15030511  T
Q  255 aagccttgacaaccacagcag 275  Q
    ||||||||||||||| |||||    
T  15030512 aagccttgacaaccatagcag 15030532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 15000550 - 15000828
Alignment:
Q  3 gcattataaatatcacctacatctcccattataatgcattcatcatgatatgagtgtctaattcaattatatatatttcagtgattgccaataatttcat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| | |||||||||||||||    
T  15000550 gcattataaatatcacctacatctcccattataatgcattcatcataatataagtgtctagttcaattatatatatttcagtaaatgccaataatttcat 15000649  T
Q  103 tgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattg------caacatcac 196  Q
    |||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||||||||||||||||| |||||||||||||      | |||||||    
T  15000650 tgtgttgaaatttccaaaatgcttcaaagaaataagctattaccaatgtcgtgtcttattttgttcttctatgtgtttgtaattgccacatccacatcac 15000749  T
Q  197 ctcatgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagcag 275  Q
    ||||||| |||| || || ||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  15000750 ctcatgctgcaagaaaaaaccaaggtagtgaggttgatgctctgttgaaatggaaggcaagccttgacaaccacagcag 15000828  T

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Target: chr1; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 14501730 - 14501981
Alignment:
Q  1 atgcattataaatatcacctacatctcccattataatgcattcatcatgatatgagtgtctaattcaattatatatatttcagtgattgccaataatttc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||                 |||    ||| ||||    
T  14501730 atgcattataaatatcacctacatttcccattataatgcattcatcataatataagtgtctagttcaaa----------------att----atactttc 14501809  T
Q  101 attgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctca 200  Q
    |||||||| |||||| |||||| ||||| |  || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  14501810 attgtgttcaaattttcaaaatgcttcagaagataaagctcttaccaatgtcgtgtcttattttgttcttctatgtgtttgtaattgcaacatcacctca 14501909  T
Q  201 tgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacag 272  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14501910 tgctgcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacaacag 14501981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 15035044 - 15035303
Alignment:
Q  8 ataaatatcacctacatctcccattataatgcattcatcatgata-tgagtgtctaattcaattatatatatttcagtgattgccaataatttcattgtg 106  Q
    |||||||||| |||||||||||| ||| |||||| ||  || ||| | ||| |||  |||||||||| |||  |||||||||||||||| ||||||| |     
T  15035044 ataaatatcagctacatctcccaatatgatgcatgcaatatcataataagtctcttgttcaattata-atacatcagtgattgccaatactttcatttta 15035142  T
Q  107 ttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctcatgcagc 206  Q
    ||| |  |||  |||| ||||| || |||||| ||||||||||||| |||||| ||||||||||||| |||| ||||||||| |||||||||||||| ||    
T  15035143 ttgta--ttc--aaatgcttcagaggatgaagttcttaccaatgtcgtgtcttcttttgttcttctatgtgtatgtaattgccacatcacctcatgctgc 15035238  T
Q  207 aacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaca 271  Q
    ||||| |||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||    
T  15035239 aacaaaaatcaaaggcagtgaggcagatgctctgttgaagtggaaagcaagccttgacaaccaca 15035303  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 14465698 - 14465876
Alignment:
Q  99 tcattgtgttgaaatttccaaaatacttcaaagaatgaagctcttac---caatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatca 195  Q
    ||||||| || ||||||||||||| ||||| ||||||||||  ||||   ||| |   |||||| || |||||||||| |||||||| || || ||||||    
T  14465698 tcattgttttcaaatttccaaaatgcttcatagaatgaagcagttacaaccaaagcagtgtcttcttgtgttcttctatgtgtttgttatggccacatca 14465797  T
Q  196 cctcatgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagca 274  Q
     ||||| | ||||||| |||| || | || ||| | ||||||||||||||||||||||||||| |||||||||| ||||    
T  14465798 tctcatactgcaacaaaaatcaaaagcagtgagacagatgctctgttgaagtggaaagcaagctttgacaaccaaagca 14465876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 14534845 - 14534787
Alignment:
Q  216 ccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagca 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14534845 ccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccatagca 14534787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14535038 - 14534966
Alignment:
Q  1 atgcattataaatatcacctacatctcccattataatgcattcatcatgatatgagtgtctaattcaattata 73  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||| | ||||||||    
T  14535038 atgcattataaatatcacctacatttcccattataatgcattcatcataatacaagtgtctagtgcaattata 14534966  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 15015702 - 15015833
Alignment:
Q  143 taccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctcatgcagcaacaataatccaaggtagcgaggctgatgctctgtt 242  Q
    |||||||||| |||||| |||||||||| || |||||||||||    | |||||||||||| ||||||| |||| ||||  | ||||| ||  |||||||    
T  15015702 taccaatgtcgtgtcttcttttgttcttttatgtgtttgtaatgatcaaatcacctcatgctgcaacaaaaatcaaaggccgtgaggcagagtctctgtt 15015801  T
Q  243 gaagtggaaagcaagccttgacaaccacagca 274  Q
    ||||||||||| |||| |||||||||| ||||    
T  15015802 gaagtggaaagaaagctttgacaaccaaagca 15015833  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 15015581 - 15015623
Alignment:
Q  6 ttataaatatcacctacatctcccattataatgcattcatcat 48  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15015581 ttataaatatcacctgcatctcccattataatgcattcatcat 15015623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 14480658 - 14480763
Alignment:
Q  161 ttttgttcttctacgtgtttgtaattgcaacatcacctcatgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagcct 260  Q
    |||||||||| |  ||||||||||| |  |||||||||||||| |   ||| || |||||| | |||||| |||||||| || ||||||||||||||| |    
T  14480658 ttttgttcttttgtgtgtttgtaatggttacatcacctcatgctgatgcaaaaaaccaaggcaacgaggcagatgctcttttaaagtggaaagcaagctt 14480757  T
Q  261 tgacaa 266  Q
    ||||||    
T  14480758 tgacaa 14480763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15030272 - 15030308
Alignment:
Q  1 atgcattataaatatcacctacatctcccattataat 37  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  15030272 atgcattataaatatcacctaaatctcccatcataat 15030308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5104 - 5276
Alignment:
Q  97 tttcattgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcac 196  Q
    |||| ||||||  |||||||||||||  |||| |  ||||||| ||||||| |||  ||| ||  | |||||||||| ||||||||||| || |||||||    
T  5104 tttctttgtgtccaaatttccaaaatgtttcagaagatgaagcccttaccattgttgtgtgttcgtctgttcttctatgtgtttgtaatagccacatcac 5203  T
Q  197 ctcatgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacca 269  Q
    |||||||  |||||| ||||||||| ||||| |  |||| ||| |||||||||||||||||| ||||||||||    
T  5204 ctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaacca 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 10616 - 10780
Alignment:
Q  110 aaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctcatgcagcaac 209  Q
    ||||||||||||| ||||| || |||||||| || ||| | ||||||||| ||| |||||| |   |||||||||| |||||||||||||||||  |  |    
T  10616 aaatttccaaaatgcttcagagcatgaagctgtttccattatcatgtcttctttggttcttttgtatgtttgtaatggcaacatcacctcatgcttcgtc 10715  T
Q  210 aataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagca 274  Q
    || ||  ||| | ||||||||  ||||| | ||||| |||||||||||| |||||||||| ||||    
T  10716 aaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagca 10780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5748 - 5920
Alignment:
Q  97 tttcattgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcac 196  Q
    |||| ||||||  |||||||||||||  |||| |  ||||||| ||||||| |||  ||| ||  | |||||||||| ||||||||||| || |||||||    
T  5748 tttctttgtgtccaaatttccaaaatgtttcagaagatgaagcccttaccattgttgtgtgttcgtctgttcttctatgtgtttgtaatagccacatcac 5847  T
Q  197 ctcatgcagcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacca 269  Q
    |||||||  |||||| ||||||||| ||||| |  |||| ||| |||||||||||||||||| ||||||||||    
T  5848 ctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaacca 5920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 11259 - 11423
Alignment:
Q  110 aaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttcttctacgtgtttgtaattgcaacatcacctcatgcagcaac 209  Q
    ||||||||||||| ||||| || |||||||| || ||| | ||||||||| ||| |||||| |   |||||||||| |||||||||||||||||  |  |    
T  11259 aaatttccaaaatgcttcagagcatgaagctgtttccattatcatgtcttctttggttcttttgtatgtttgtaatggcaacatcacctcatgcttcgtc 11358  T
Q  210 aataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccacagca 274  Q
    || ||  ||| | ||||||||  ||||| | ||||| |||||||||||| |||||||||| ||||    
T  11359 aaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagca 11423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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