View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_66 (Length: 291)
Name: NF3069_low_66
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 10823701 - 10823968
Alignment:
| Q |
10 |
atgagaaagtgggatatgcacaatcagtctaaactaggtttacactgaagtccaatgagaatccaatattttgtggttatttttaaaaaggcggctacaa |
109 |
Q |
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| T |
10823701 |
atgagaaagggggatatgcacaatcagtctaaactagttttacaccgaagtccaatgagaatccaatattttgtggttatttttaaaaaggcggctacaa |
10823800 |
T |
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| Q |
110 |
agtggacttatgtggcaatatgacgagttcttattaaaagtcggtgtaaaactaatttaaggttaaggtttagaccaaccatatatcccttgatatttaa |
209 |
Q |
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| T |
10823801 |
agtggacttaagtggcaatatgatgagttcttattagaagtcggtgtaaaactaatttaaggttaaggtttagaccaaccatatatcccttgatatttaa |
10823900 |
T |
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| Q |
210 |
aatatataagatttcacaaataatgataggttctaatacgatacttcatcctccacctagaagtttgt |
277 |
Q |
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| T |
10823901 |
aatatataagatttcacaaataatgatatgttctagtatgatacttcatcctccacctagaagtttgt |
10823968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 18358504 - 18358408
Alignment:
| Q |
33 |
tcagtctaaactaggtttacactgaagtccaatgagaatccaatattttgtggttatttttaaaaaggcggctacaaagtggacttatgtggcaatat |
130 |
Q |
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| T |
18358504 |
tcagtgtaaactaattttacactgacgtccaatgagaatcaagtatgttgcagttaatttt-aaaatgtggttacaaagtggatttatgtggcgatat |
18358408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 38149914 - 38149861
Alignment:
| Q |
39 |
taaactaggtttacactgaagtccaatgagaatccaatattttgtggttatttt |
92 |
Q |
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| T |
38149914 |
taaactagctttacgctaatgtccaatgagaatccaatattttgtggttatttt |
38149861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 44498675 - 44498611
Alignment:
| Q |
33 |
tcagtctaaactaggtttacactgaagtccaatgagaatccaatattttgtggttatttttaaaa |
97 |
Q |
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| T |
44498675 |
tcagtgtaaaatagttttacaccgacttccaatgagaatccaacattttgccgttatttttaaaa |
44498611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 6829470 - 6829414
Alignment:
| Q |
105 |
tacaaagtggacttatgtggcaatatgacgagttcttattaaaagtcggtgtaaaac |
161 |
Q |
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| T |
6829470 |
tacaaattggacttatatgacaatatggtgagttcttattgaatgtcggtgtaaaac |
6829414 |
T |
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