View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_68 (Length: 288)
Name: NF3069_low_68
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 41812751 - 41813012
Alignment:
| Q |
17 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagta |
116 |
Q |
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| T |
41812751 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctaaaggaaatggagta |
41812850 |
T |
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| Q |
117 |
ttcaaacctcttttttagacagaacaatattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41812851 |
ttcaaacctcttttttagacagaacaatattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctac |
41812950 |
T |
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| Q |
217 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
278 |
Q |
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| T |
41812951 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
41813012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 7605652 - 7605391
Alignment:
| Q |
17 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagta |
116 |
Q |
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| T |
7605652 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctataggaaatggagta |
7605553 |
T |
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| Q |
117 |
ttcaaacctcttttttagacagaacaatattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgc |
216 |
Q |
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| T |
7605552 |
ttcaaacctcttttttagacagaataatattttaagagaggctattgtgtatgtggattggtgggtgttgttggttgacatgtttgggtttaggtgctgc |
7605453 |
T |
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| Q |
217 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
278 |
Q |
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| T |
7605452 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
7605391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 31769206 - 31768954
Alignment:
| Q |
17 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagta |
116 |
Q |
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| T |
31769206 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctataggaaatggagta |
31769107 |
T |
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| Q |
117 |
ttcaaacctcttttttagacagaacaatattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgc |
216 |
Q |
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| T |
31769106 |
ttcaaacctcttttttagacagaacaatattttaagagaggccattgtgta---------gtgggtgttgttggttggcatgtttgggtttaggtgctgc |
31769016 |
T |
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| Q |
217 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
278 |
Q |
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| T |
31769015 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtaagatctccctat |
31768954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 14186695 - 14186922
Alignment:
| Q |
17 |
agtttggaagcatctaataacaatgtcatacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagta |
116 |
Q |
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| T |
14186695 |
agtttggaagcatctaataacaatgtcatacatg----tgaggactgccccacaatttggtctgtgaact--------cacacctatagaaaatggagta |
14186782 |
T |
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| Q |
117 |
ttcaaacctcttttttagacagaacaatattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14186783 |
ttcaaacctcttttttagacagaacaatattttaagagaggctattgtgtatgtggattggtgggtgttgttggttggcatgtttgggt----------- |
14186871 |
T |
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| Q |
217 |
tgcagtttcagcggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
278 |
Q |
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| T |
14186872 |
-----------cggctgtggtggcttccttttgctttccttttggtggtgagatctccctat |
14186922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 20902135 - 20902088
Alignment:
| Q |
90 |
ttagtcacacctatggtaaatggagtattcaaacctcttttttagacag |
138 |
Q |
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| T |
20902135 |
ttagtcacacctataggaaatggagtattcaaacc-attttttagacag |
20902088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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