View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_69 (Length: 287)

Name: NF3069_low_69
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_69
NF3069_low_69
[»] chr8 (8 HSPs)
chr8 (57-271)||(11338737-11338950)
chr8 (57-271)||(11345262-11345476)
chr8 (63-267)||(11359146-11359350)
chr8 (59-243)||(11339582-11339766)
chr8 (1-62)||(11338649-11338710)
chr8 (1-62)||(11345174-11345235)
chr8 (1-62)||(11339492-11339553)
chr8 (5-62)||(11359052-11359109)
[»] chr4 (4 HSPs)
chr4 (63-182)||(23840465-23840583)
chr4 (63-182)||(23847339-23847459)
chr4 (4-62)||(23840614-23840672)
chr4 (10-57)||(23847255-23847302)
[»] chr7 (3 HSPs)
chr7 (63-152)||(24021582-24021671)
chr7 (76-197)||(24031024-24031145)
chr7 (72-137)||(23993355-23993420)
[»] chr6 (1 HSPs)
chr6 (63-106)||(19746861-19746904)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 57 - 271
Target Start/End: Original strand, 11338737 - 11338950
Alignment:
Q  57 gcaaacaaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11338737 gcaaacaaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgat-ataaaaaggataaaa 11338835  T
Q  157 atatttttcaatagccaaccagtaaataatgcctctcaaatatacaccattattaaatggagagataagaggaatcaaaggaaaactgttcatatttctc 256  Q
    ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11338836 atagttttgaatagccaaccagtaaatagtgcctctcaaatatacaccattattaaatggagagataagaggaatcaaaggaaaactgttaatatttctc 11338935  T
Q  257 caacaatcatcactc 271  Q
    |||||||||||||||    
T  11338936 caacaatcatcactc 11338950  T

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Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 57 - 271
Target Start/End: Original strand, 11345262 - 11345476
Alignment:
Q  57 gcaaacaaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaa 156  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11345262 gcaaacaaaattgcatgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgttcataaaaaggataaaa 11345361  T
Q  157 atatttttcaatagccaaccagtaaataatgcctctcaaatatacaccattattaaatggagagataagaggaatcaaaggaaaactgttcatatttctc 256  Q
    ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  11345362 atagttttcaatagccaaccagtaaatagtgcctctcaaatacacaccattattaaatgaagagataagaggaatcaaaggaaaactgttaatatttctc 11345461  T
Q  257 caacaatcatcactc 271  Q
    |||||||||||||||    
T  11345462 caacaatcatcactc 11345476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 11359146 - 11359350
Alignment:
Q  63 aaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatattt 162  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |   | | ||||||||||||||||||| ||    
T  11359146 aaaattgcatgtatgcctcagttgaaagatcaagggagacaatcttgaactgatcaacatgagtaatagccccataaccataaaaaggataaaaatagtt 11359245  T
Q  163 ttcaatagccaaccagtaaataatgcctctcaaatatacaccattattaaatggagagataagaggaatcaaaggaaaactgttcatatttctccaacaa 262  Q
     | |||||| ||| |||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  11359246 ctgaatagctaactagtaaatagtgccgctcaaatacacaccattattaaatggagagataagaggaatcacaggaaaactgtcgatatttctccaacaa 11359345  T
Q  263 tcatc 267  Q
    |||||    
T  11359346 tcatc 11359350  T

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Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 11339582 - 11339766
Alignment:
Q  59 aaacaaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaat 158  Q
    |||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||  | ||||| |||||| |||||||    
T  11339582 aaacaaaattgcatatatgtctcaattgatagatcaagggaaaccatcttgaattgatcaacacgagtaatagactcataatcatgaaaagggtaaaaat 11339681  T
Q  159 atttttcaatagccaaccagtaaataatgcctctcaaatatacaccattattaaatggagagataagaggaatcaaaggaaaact 243  Q
    | || | ||||||||||||||||||| |||| || |||||| ||||||||||  || ||||  ||||||||||||||||||||||    
T  11339682 aattctgaatagccaaccagtaaatagtgccacttaaatatgcaccattattgtattgagatgtaagaggaatcaaaggaaaact 11339766  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11338710 - 11338649
Alignment:
Q  1 tttcagcctactcttcaggttcttttgaaccgactttgcttttcgcatgatttcaagcaaac 62  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  11338710 tttcagccaactcttcaggttcttttggaccgactttgcttttcacatgatttcaagcaaac 11338649  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11345235 - 11345174
Alignment:
Q  1 tttcagcctactcttcaggttcttttgaaccgactttgcttttcgcatgatttcaagcaaac 62  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  11345235 tttcagccaactcttcaggttcttttggaccgactttgcttttcgcacgatttcaaggaaac 11345174  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11339553 - 11339492
Alignment:
Q  1 tttcagcctactcttcaggttcttttgaaccgactttgcttttcgcatgatttcaagcaaac 62  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||| ||||    
T  11339553 tttcagccaactcttcaggttcttttggaccggctttgcttttcgcacgatttcaaggaaac 11339492  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 11359109 - 11359052
Alignment:
Q  5 agcctactcttcaggttcttttgaaccgactttgcttttcgcatgatttcaagcaaac 62  Q
    |||| ||||||||  |||||||| ||||||||||||||||||| ||||||||| ||||    
T  11359109 agccaactcttcattttcttttggaccgactttgcttttcgcacgatttcaaggaaac 11359052  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 23840583 - 23840465
Alignment:
Q  63 aaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatattt 162  Q
    ||||||| ||||||||||| || |||||||||||||||| |||| ||| ||||||||||||||||||| |    | |||||||||||||| |||||| ||    
T  23840583 aaaattggatgtatgtctcggtcgaaagatcaagggaaagaatcatgagttgatcaacatgagtaatacatgccttatcataaaaaggat-aaaatagtt 23840485  T
Q  163 ttcaatagccaaccagtaaa 182  Q
    ||  ||||||||||||||||    
T  23840484 ttgcatagccaaccagtaaa 23840465  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 23847339 - 23847459
Alignment:
Q  63 aaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggat-aaaaatatt 161  Q
    ||||||| ||||||||||| || |||||||||||||||| ||||  || ||||||||||||||||||| |    | |||||||||||||| ||||||| |    
T  23847339 aaaattggatgtatgtctcggtcgaaagatcaagggaaagaatcacgagttgatcaacatgagtaatacatccctcatcataaaaaggataaaaaatagt 23847438  T
Q  162 tttcaatagccaaccagtaaa 182  Q
    |||  ||||||||||| ||||    
T  23847439 tttgcatagccaaccaataaa 23847459  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 23840614 - 23840672
Alignment:
Q  4 cagcctactcttcaggttcttttgaaccgactttgcttttcgcatgatttcaagcaaac 62  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  23840614 cagccaactcttcaggttcttttggaccgcctttgcttttcgcatgatttcaagaaaac 23840672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 23847302 - 23847255
Alignment:
Q  10 actcttcaggttcttttgaaccgactttgcttttcgcatgatttcaag 57  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  23847302 actcttccggttcttttggaccgcctttgcttttcgcatgatttcaag 23847255  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 24021671 - 24021582
Alignment:
Q  63 aaaattgcatgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggat 152  Q
    |||||||||||  |||||| || |||||||||||||||||||||  |||| ||| |||||||||||||  || || ||||||| ||||||    
T  24021671 aaaattgcatggttgtctcggtcgaaagatcaagggaaacaatcacgaatcgattaacatgagtaataatctcgtaatcataagaaggat 24021582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 24031145 - 24031024
Alignment:
Q  76 tgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatatttttcaatagccaac 175  Q
    |||||| || |||||||||||||||| ||||  ||| ||||||||||||||||||| ||  | ||||||| || ||| |||||| || | |||||||||     
T  24031145 tgtctcggtcgaaagatcaagggaaataatcacgaagtgatcaacatgagtaatagtctcataatcataacaacgattaaaatagttctgaatagccaat 24031046  T
Q  176 cagtaaataatgcctctcaaat 197  Q
     |||||| | |||| |||||||    
T  24031045 gagtaaacagtgccactcaaat 24031024  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 23993420 - 23993355
Alignment:
Q  72 tgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgt 137  Q
    |||||||||| |||||||| ||||| |||| |||||  ||||| ||| ||||| ||||||||||||    
T  23993420 tgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgt 23993355  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 19746861 - 19746904
Alignment:
Q  63 aaaattgcatgtatgtctcagttgaaagatcaagggaaacaatc 106  Q
    |||||||  ||||||||||||| |||||||||||||||||||||    
T  19746861 aaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatc 19746904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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