View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_71 (Length: 274)
Name: NF3069_low_71
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 27944328 - 27944481
Alignment:
| Q |
31 |
tatcagtttccctttaaccgtcaactaattccacatgtcatgcatctatttgttatca----ttcattattatccccttttttcagtaatcgtaaccact |
126 |
Q |
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| T |
27944328 |
tatcagtttccctttaaccgtcaactaattccacgtgtcatgcatctatttgttatcactcattcattattatccccttttttcagtaatcgtaaccact |
27944427 |
T |
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| Q |
127 |
gtataaagtctcactcagcacccaacttaacatatcataacataccatactacg |
180 |
Q |
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| T |
27944428 |
atataaagactcactcagcacccaacttaacatatcataacataccatactacg |
27944481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 92 - 261
Target Start/End: Original strand, 27435881 - 27436053
Alignment:
| Q |
92 |
attattatcccctttt-ttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactac--gtacgatca |
188 |
Q |
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| T |
27435881 |
attataatcccctttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaagttca |
27435980 |
T |
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| Q |
189 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgttcttttcctgttcatctc |
261 |
Q |
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| T |
27435981 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgtccttttcctgttcttctc |
27436053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 27550579 - 27550501
Alignment:
| Q |
53 |
aactaattccacatgtcatgcatctatttgttatcattcattattatccccttttttcagtaatcgtaaccactgtataaag |
134 |
Q |
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| T |
27550579 |
aactaattccacgtgtcctgcatctatttgttatcactcattattatccctttatt---gtaatcgtaaccactatataaag |
27550501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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