View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_72 (Length: 272)
Name: NF3069_low_72
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 46024144 - 46023900
Alignment:
| Q |
23 |
ctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctcactcctagata |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46024144 |
ctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcctcactcctagata |
46024045 |
T |
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| Q |
123 |
ctttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgttcctttctttgttctcatagggtttgtct--------agggatcaatgaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
46024044 |
ctttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgtttctttctttgttctcatagggtttgtctatttcatgagggatcaaagaa |
46023945 |
T |
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| Q |
215 |
atattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
259 |
Q |
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| T |
46023944 |
atattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
46023900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 46265223 - 46265467
Alignment:
| Q |
23 |
ctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgtctcactcctagata |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46265223 |
ctgctctatcaaaagtacctaaccatagtcttagtttctgtgatgagtctttgatctcagctatccatcttcctgatggcctttgcctcactcctagata |
46265322 |
T |
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| Q |
123 |
ctttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgttcctttctttgttctcatagggtttgtct--------agggatcaatgaa |
214 |
Q |
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| T |
46265323 |
ctttttctgatgacctttgtttgatgtttttggaatcttcttaatagtgtttctttctttgttctcatagggtttgtctatttcatgagggatcaaagaa |
46265422 |
T |
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| Q |
215 |
atattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46265423 |
atattgttgtttttgtgagtttggtgtggaaattttaaggtgtct |
46265467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 12508680 - 12508729
Alignment:
| Q |
64 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgtctcac |
113 |
Q |
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| T |
12508680 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
12508729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 3160268 - 3160225
Alignment:
| Q |
70 |
tctttgatctcagctatccatcttcctgatggcctttgtctcac |
113 |
Q |
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| T |
3160268 |
tcttttatctcagctacccatcttcctgatggcctttgtctcac |
3160225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 33274344 - 33274382
Alignment:
| Q |
69 |
gtctttgatctcagctatccatcttcctgatggcctttg |
107 |
Q |
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| T |
33274344 |
gtctttgatctcagctacccatctccctgatggcctttg |
33274382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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